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List of works by Jonathan Shao

A Multiplex PCR Assay to Detect and Differentiate Select Agent Strains of Ralstonia solanacearum

scientific article published on 01 March 2015

A Nest of LTR Retrotransposons Adjacent the Disease Resistance-Priming Gene NPR1 in Beta vulgaris L. U.S. Hybrid H20.

scientific article published on 15 April 2009

A TaqMan-based real time PCR assay for specific detection and quantification of Xylella fastidiosa strains causing bacterial leaf scorch in oleander ⬇️

scientific article published on November 16, 2012

A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

scientific article published on 23 October 2020

A novel virus of the genus Cilevirus causing symptoms similar to citrus leprosis

scientific article

Analysis of the Alfalfa Root Transcriptome in Response to Salinity Stress ⬇️

scientific article published on April 15, 2013

Cabbage looper (Trichoplusia ni Hübner) labial glands contain unique bacterial flora in contrast with their alimentary canal, mandibular glands, and Malpighian tubules

scientific article published on 28 January 2020

Cellular and Transcriptional Responses of Resistant and Susceptible Cultivars of Alfalfa to the Root Lesion Nematode, Pratylenchus penetrans

scientific article published on 31 July 2019

Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to <i>Phytophthora palmivora</i> Infection

scientific article published on 01 January 2021

Co-infection of Sweet Orange with Severe and Mild Strains of Citrus tristeza virus Is Overwhelmingly Dominated by the Severe Strain on Both the Transcriptional and Biological Levels

scientific article published on 31 August 2017

Coe1 in Beta vulgaris L. Has a Tnp2-Domain DNA Transposase Gene within Putative LTRs and Other Retroelement-Like Features.

scientific article published on January 2008

Combination of RNAseq and SNP nanofluidic array reveals the center of genetic diversity of cacao pathogen Moniliophthora roreri in the upper Magdalena Valley of Colombia and its clonality

scientific article published on 27 August 2015

Comparative Transcriptome Analysis Reveals a Preformed Defense System in Apple Root of a Resistant Genotype of G.935 in the Absence of Pathogen.

scientific article published on 30 March 2017

Comparison of the ‘Ca. Liberibacter asiaticus’ Genome Adapted for an Intracellular Lifestyle with Other Members of the Rhizobiales ⬇️

scientific article published on August 18, 2011

Complete Genome Sequence of Spiroplasma citri Strain R8-A2T, Causal Agent of Stubborn Disease in Citrus Species

scientific article published on 20 April 2017

Complete Genome Sequence of Spiroplasma kunkelii Strain CR2-3x, Causal Agent of Corn Stunt Disease in Zea mays L.

scientific article

Complete Genome Sequence of Spiroplasma phoeniceum Strain P40, a Plant Pathogen Isolated from Diseased Plants of Madagascar Periwinkle [ (L.) G. Don]

article

Complete Genome Sequence of Spiroplasma turonicum Strain Tab4cT, a Parasite of a Horse Fly, Haematopota sp. (Diptera: Tabanidae).

scientific article published on 19 November 2015

Complete Genome Sequence of the Alfalfa latent virus

scientific article published on 16 April 2015

Complete Nucleotide Sequence of a Novel Hibiscus-Infecting Cilevirus from Florida and Its Relationship with Closely Associated Cileviruses

scientific article published on 25 January 2018

Conserved microsynteny of NPR1 with genes encoding a signal calmodulin-binding protein and a CK1-class protein kinase in Beta vulgaris and two other eudicots

scientific article published on 30 October 2008

Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII).

scientific article published on 21 July 2009

Cryptic plasmid pSKU146 from the wall-less plant pathogen Spiroplasma kunkelii encodes an adhesin and components of a type IV translocation-related conjugation system

scientific article

Dietary Patterns Differentially Affect Microbiome Composition and Function in a Porcine Model of Obesity-related Metabolic Disorder (OR23-04-19)

Differential gene expression by Moniliophthora roreri while overcoming cacao tolerance in the field.

scientific article published on 5 June 2014

Draft Genome Sequence of 'Candidatus Phytoplasma pini'-Related Strain MDPP: A Resource for Comparative Genomics of Gymnosperm-Infecting Phytoplasmas

scientific article published on 17 February 2020

Draft Genome Sequence of Pseudomonas sp. Strain CES, Containing the Entire Alkylxanthine Gene Cluster for Caffeine Breakdown

scientific article published on 09 July 2020

Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao

scientific article published on 30 September 2019

First Report of Alphapartitiviruses Infecting Alfalfa ( L.) in the United States

scientific article published on 29 November 2018

Gene Expression Profiling in Viable but Nonculturable (VBNC) Cells of Pseudomonas syringae pv. syringae

scientific article

Genome Assembly of Citrus Leprosis Virus Nuclear Type Reveals a Close Association with Orchid Fleck Virus ⬇️

scientific article published on July 25, 2013

Genome Sequence of a Xylella fastidiosa Strain Causing Mulberry Leaf Scorch Disease in Maryland

scientific article

Genome Sequence of a Xylella fastidiosa Strain Causing Sycamore Leaf Scorch Disease in Virginia

scientific article published on 21 August 2014

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.

scientific article

Genome and transcriptome analysis of the latent pathogen Lasiodiplodia theobromae, an emerging threat to the cacao industry

scientific article published on 03 October 2019

Genotype-specific suppression of multiple defense pathways in apple root during infection by

article by Yanmin Zhu et al published 2019 in Horticulture research

History and Diversity of Citrus leprosis virus Recorded in Herbarium Specimens.

scientific article published on 11 May 2015

Identification and Molecular Characterization of Nuclear Citrus leprosis virus, a Member of the Proposed Dichorhavirus Genus Infecting Multiple Citrus Species in Mexico

scientific article

Identification of emerging viral genomes in transcriptomic datasets of alfalfa (Medicago sativa L.).

scientific article published on 10 December 2019

Identification of the Coding-Complete Genome of Cycas Necrotic Stunt Virus in Transcriptomic Data Sets of Alfalfa (Medicago sativa)

scientific article published on 19 September 2019

In silico identification of transcription factors in Medicago sativa using available transcriptomic resources

scientific article

Independent origins of diploidy in Metarhizium

scientific article published on 12 September 2016

Mitochondrial Genomics of Six Cacao Pathogens From the Basidiomycete Family <i>Marasmiaceae</i>

scientific article published on 28 October 2021

Phytophthora megakarya and P. palmivora, Causal Agents of Black Pod Rot, Induce Similar Plant Defense Responses Late during Infection of Susceptible Cacao Pods.

scientific article

Phytophthora megakarya and P. palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms

scientific article

Population of endogenous pararetrovirus genomes in carrizo citrange

scientific article published on 16 January 2014

RNA polymerase II gene (RPB2) encoding the second largest protein subunit in Phaeosphaeria nodorum and P. avenaria.

scientific article published on 3 October 2006

Research Note: Effect of butyric acid glycerol esters on ileal and cecal mucosal and luminal microbiota in chickens challenged with Eimeria maxima

scientific article published on 03 July 2020

Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae.

scientific article published on 15 December 2017

Role Bending: Complex Relationships Between Viruses, Hosts, and Vectors Related to Citrus Leprosis, an Emerging Disease

scientific article published on 29 June 2015

Serological detection of 'Candidatus Liberibacter asiaticus' in citrus, and identification by GeLC-MS/MS of a chaperone protein responding to cellular pathogens

scientific article published on 06 July 2016

Specific Detection and Identification of American Mulberry-Infecting and Italian Olive-Associated Strains of Xylella fastidiosa by Polymerase Chain Reaction

scientific article published on 10 June 2015

Successful pod infections by Moniliophthora roreri result in differential Theobroma cacao gene expression depending on the clone's level of tolerance.

scientific article published on 14 April 2014

Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis

scientific article published on 08 November 2021

The iPhyClassifier, an interactive online tool for phytoplasma classification and taxonomic assignment

scientific article published in January 2013

The porcine translational research database: a manually curated, genomics and proteomics-based research resource.

scientific article

Transcriptional analysis of sweet orange trees co-infected with 'Candidatus Liberibacter asiaticus' and mild or severe strains of Citrus tristeza virus

scientific article published on 31 October 2017

Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita

scientific article published in PLoS ONE

Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

scientific article

Transcriptome analysis of sweet orange trees infected with 'Candidatus Liberibacter asiaticus' and two strains of Citrus Tristeza Virus

scientific article

Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight

scientific article published on 11 December 2019

Using Machine Learning to Predict Obesity Based on Genome-Wide and Epigenome-Wide Gene-Gene and Gene-Diet Interactions

scientific article published on 01 January 2021

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