List of works - Yasuhiro Shimane

Accurate high-throughput screening based on digital protein synthesis in a massively parallel femtoliter droplet array

scientific article published on 21 August 2019

Alicyclobacillus cellulosilyticus sp. nov., a thermophilic, cellulolytic bacterium isolated from steamed Japanese cedar chips from a lumbermill

scientific article

Aneurinibacillus tyrosinisolvens sp. nov., a tyrosine-dissolving bacterium isolated from organics- and methane-rich seafloor sediment

scientific article

Biochemical synthesis of novel, self-assembling glycolipids from ricinoleic acid by a recombinant α-glucosidase from Geobacillus sp.

scientific article

Brevundimonas abyssalis sp. nov., a dimorphic prosthecate bacterium isolated from deep-subsea floor sediment

scientific article

Brevundimonas denitrificans sp. nov., a denitrifying bacterium isolated from deep subseafloor sediment

scientific article

Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan.

scientific article

Complete Genome Sequence of Sphingobium sp. Strain YG1, a Lignin Model Dimer-Metabolizing Bacterium Isolated from Sediment in Kagoshima Bay, Japan.

scientific article published on 26 April 2018

Computational Analysis of the Interaction Energies between Amino Acid Residues of the Measles Virus Hemagglutinin and Its Receptors.

scientific article

Draft Genome Sequence of the Dimorphic Prosthecate Bacterium Brevundimonas abyssalis TAR-001T.

scientific article published on 17 October 2013

Enhancing thermostability and the structural characterization of Microbacterium saccharophilum K-1 β-fructofuranosidase

scientific article

Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups ⬇️

scientific article published on March 4, 2011

Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample

scientific article published in 2015

Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample made in Okinawa, Japan

scientific article

Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt

scientific article

Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples ⬇️

scientific article published on February 22, 2013

Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt ⬇️

scientific article published on June 29, 2012

Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt

scientific article published on 23 October 2020

Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957 ⬇️

scientific article published on November 4, 2011

Halobaculum magnesiiphilum sp. nov., a magnesium-dependent haloarchaeon isolated from commercial salt ⬇️

scientific article published on May 18, 2012

Halocalculus aciditolerans gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt

scientific article

Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt

scientific article

Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt ⬇️

scientific article published on April 5, 2013

Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt.

scientific article

Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt

scientific article

Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt

scientific article

Halostagnicola alkaliphila sp. nov., an alkaliphilic haloarchaeon from commercial rock salt

scientific article

Loktanella cinnabarina sp. nov., isolated from a deep subseafloor sediment, and emended description of the genus Loktanella.

scientific article

Marinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine.

scientific article

Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory ⬇️

scientific article published on January 11, 2013

Natribacillus halophilus gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium isolated from soil ⬇️

scientific article published on March 11, 2011

Natronoarchaeum

scientific article published in 2016

Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic archaeon isolated from commercial salt

scientific article

Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt ⬇️

scientific article published on June 1, 2012

Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena

scientific article published in 2021

Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment

scientific article

Salarchaeum

scientific article published in 2016

Salarchaeum japonicum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt ⬇️

scientific article published on October 15, 2010

Salinarchaeum chitinilyticum sp. nov., a chitin-degrading haloarchaeon isolated from commercial salt.

scientific article published on 3 July 2017

Salinisphaera

scientific article published in 2017

Salinisphaera japonica sp. nov., a moderately halophilic bacterium isolated from the surface of a deep-sea fish, Malacocottus gibber, and emended description of the genus Salinisphaera

scientific article

Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes

scientific article published on 28 October 2019

Structurally distinct hybrid polymer/lipid nanoconstructs harboring a type-I ribotoxin as cellular imaging and glioblastoma-directed therapeutic vectors

scientific article published on 2 September 2014

Thalassospira alkalitolerans sp. nov. and Thalassospira mesophila sp. nov., isolated from a decaying bamboo sunken in the marine environment, and emended description of the genus Thalassospira

scientific article

Thermophilic and halophilic β-agarase from a halophilic archaeon Halococcus sp. 197A.

scientific article published on 15 August 2013

Unique substrate specificity of a thermostable glycosyl hydrolase from an uncultured Anaerolinea, derived from bacterial mat on a subsurface geothermal water stream.

scientific article published on 20 June 2012

List of works by Yasuhiro Shimane

Accurate high-throughput screening based on digital protein synthesis in a massively parallel femtoliter droplet array

Alicyclobacillus cellulosilyticus sp. nov., a thermophilic, cellulolytic bacterium isolated from steamed Japanese cedar chips from a lumbermill

Aneurinibacillus tyrosinisolvens sp. nov., a tyrosine-dissolving bacterium isolated from organics- and methane-rich seafloor sediment

Biochemical synthesis of novel, self-assembling glycolipids from ricinoleic acid by a recombinant α-glucosidase from Geobacillus sp.

Brevundimonas abyssalis sp. nov., a dimorphic prosthecate bacterium isolated from deep-subsea floor sediment

Brevundimonas denitrificans sp. nov., a denitrifying bacterium isolated from deep subseafloor sediment

Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan.

Complete Genome Sequence of Sphingobium sp. Strain YG1, a Lignin Model Dimer-Metabolizing Bacterium Isolated from Sediment in Kagoshima Bay, Japan.

Computational Analysis of the Interaction Energies between Amino Acid Residues of the Measles Virus Hemagglutinin and Its Receptors.

Draft Genome Sequence of the Dimorphic Prosthecate Bacterium Brevundimonas abyssalis TAR-001T.

Enhancing thermostability and the structural characterization of Microbacterium saccharophilum K-1 β-fructofuranosidase

Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups ⬇️

Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample

Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample made in Okinawa, Japan

Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt

Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples ⬇️

Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt ⬇️

Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt

Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957 ⬇️

Halobaculum magnesiiphilum sp. nov., a magnesium-dependent haloarchaeon isolated from commercial salt ⬇️

Halocalculus aciditolerans gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt

Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt

Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt ⬇️

Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt.

Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt

Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt

Halostagnicola alkaliphila sp. nov., an alkaliphilic haloarchaeon from commercial rock salt

Loktanella cinnabarina sp. nov., isolated from a deep subseafloor sediment, and emended description of the genus Loktanella.

Marinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine.

Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory ⬇️

Natribacillus halophilus gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium isolated from soil ⬇️

Natronoarchaeum

Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic archaeon isolated from commercial salt

Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt ⬇️

Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena

Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment

Salarchaeum

Salarchaeum japonicum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt ⬇️

Salinarchaeum chitinilyticum sp. nov., a chitin-degrading haloarchaeon isolated from commercial salt.

Salinisphaera

Salinisphaera japonica sp. nov., a moderately halophilic bacterium isolated from the surface of a deep-sea fish, Malacocottus gibber, and emended description of the genus Salinisphaera

Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes

Structurally distinct hybrid polymer/lipid nanoconstructs harboring a type-I ribotoxin as cellular imaging and glioblastoma-directed therapeutic vectors

Thalassospira alkalitolerans sp. nov. and Thalassospira mesophila sp. nov., isolated from a decaying bamboo sunken in the marine environment, and emended description of the genus Thalassospira

Thermophilic and halophilic β-agarase from a halophilic archaeon Halococcus sp. 197A.

Unique substrate specificity of a thermostable glycosyl hydrolase from an uncultured Anaerolinea, derived from bacterial mat on a subsurface geothermal water stream.