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List of works by Ljiljana Paša-Tolić

21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometer Greatly Expands Mass Spectrometry Toolbox

scientific article published on 12 October 2016

25th ASMS Sanibel Conference on Top Down Mass Spectrometry

scientific article published in July 2013

A compendium of multi-omic sequence information from the Saanich Inlet water column

scientific article published on 31 October 2017

A conceptual approach for FT-ICR cell harmonization utilizing external shim electrodes

A data-mining scheme for identifying peptide structural motifs responsible for different MS/MS fragmentation intensity patterns

scientific article

A five-level classification system for proteoform identifications

scientific article published on 01 October 2019

AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.

scientific article published on January 2006

Activation of the plant mevalonate pathway by extracellular ATP

scientific article published on 21 January 2022

Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography

scholarly article by Stephen J. Callister et al published October 2018 in Soil Biology and Biochemistry

Advanced Mass Calibration and Visualization for FT-ICR Mass Spectrometry Imaging ⬇️

scientific article published on August 28, 2012

Advanced solvent based methods for molecular characterization of soil organic matter by high-resolution mass spectrometry

scientific article

Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry

scientific article published on 12 March 2019

An Integrated Top-Down and Bottom-Up Strategy for Characterization of Protein Isoforms and Modifications ⬇️

scientific article published on January 1, 2011

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

scientific article published on 01 May 2002

An integrated top-down and bottom-up proteomic approach to characterize the antigen-binding fragment of antibodies

scientific article published on 13 April 2014

Angular averaged profiling of the radial electric field in compensated FTICR Cells

scientific article

Application of printed circuit board technology to FT-ICR MS analyzer cell construction and prototyping

scientific article published on 24 July 2014

Atmo-ecometabolomics: a novel atmospheric particle chemical characterization methodology for ecological research

scientific article published on 16 January 2019

Atmo-metabolomics: a new measurement approach for investigating aerosol composition and ecosystem functioning

article

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics

scientific article published on 01 July 2018

Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics

scientific article published on 08 July 2020

Automated genome mining of ribosomal peptide natural products

scientific article

Automated immobilized metal affinity chromatography system for enrichment of Escherichia coli phosphoproteome.

scientific article published on 8 May 2013

Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

scientific article published on 27 June 2019

Biogenic manganese oxide nanoparticle formation by a multimeric multicopper oxidase Mnx.

scientific article published on 29 September 2017

C60 secondary ion Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 18 November 2011

Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore

scientific article published on 13 June 2016

Characterization of human alcohol dehydrogenase isoenzymes by capillary isoelectric focusing — mass spectrometry

scientific article published on 01 July 2000

Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation

scientific article published on 15 January 2014

Close and distant: Contrasting the metabolism of two closely related subspecies of Scots pine under the effects of folivory and summer drought

scientific article published on 25 September 2017

Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

scientific article published on 22 January 2018

Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

scientific article

Considerations for electron capture dissociation efficiency in FTICR mass spectrometry

Correction to Identification of c-Type Heme-Containing Peptides Using Nonactivated Immobilized Metal Affinity Chromatography Resin Enrichment and Higher-Energy Collisional Dissociation

scholarly article published in Analytical Chemistry

Data mining and visualisation: general discussion

scientific article published on 01 August 2019

De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods.

scientific article

De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra

scientific article

De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.

scientific article

Dealing with complexity: general discussion

scientific article published on 01 August 2019

Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae ⬇️

scientific article

Dengue virus infection perturbs lipid homeostasis in infected mosquito cells

scientific article

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

scientific article published on 09 May 2013

Dissociation behavior of doubly-charged tryptic peptides: correlation of gas-phase cleavage abundance with ramachandran plots

scientific article published in March 2004

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

scientific article

Dynamic metabolic reprogramming in dendritic cells: An early response to influenza infection that is essential for effector function

scientific article published on 26 October 2020

Enhanced top-down characterization of histone post-translational modifications

scientific article

Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry.

scientific article published in July 2002

Evaluation of SDS depletion using an affinity spin column and IMS-MS detection

scientific article published on 24 September 2012

FRET Imaging of Diatoms Expressing a Biosilica-Localized Ribose Sensor ⬇️

scientific article published on March 21, 2012

FT-ICR MS optimization for the analysis of intact proteins

scientific article (publication date: 15 October 2009)

Formularity: Software for Automated Formula Assignment of Natural and Other Organic Matter from Ultrahigh-Resolution Mass Spectra

scientific article

Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits

scientific article

Genes for the major structural components of Thermotogales species' togas revealed by proteomic and evolutionary analyses of OmpA and OmpB homologs

scientific article

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

scientific article

HCMV pUS28 initiates pro-migratory signaling via activation of Pyk2 kinase ⬇️

scientific article published on December 7, 2010

Haloferax volcanii archaeosortase is required for motility, mating, and C-terminal processing of the S-layer glycoprotein.

scientific article

High Speed Intact Protein Characterization Using 4X Frequency Multiplication, Ion Trap Harmonization, and 21 Tesla FTICR-MS.

scientific article published on 3 April 2018

High Throughput Proteome-Wide Precision Measurements of Protein Expression Using Mass Spectrometry

scientific article published in 1999

High mass accuracy and high mass resolving power FT-ICR secondary ion mass spectrometry for biological tissue imaging

scientific article published on 19 May 2013

High resolution techniques: general discussion

scientific article published on 01 August 2019

High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform

scientific article published on 25 September 2019

High-performance separations and mass spectrometric methods for high-throughput proteomics using accurate mass tags

scientific article

High-resolution ultrahigh-pressure long column reversed-phase liquid chromatography for top-down proteomics

scientific article published on 5 January 2017

High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

scientific article published on 29 October 2021

High-throughput proteomics

scientific article published on January 2014

High-throughput proteomics of breast carcinoma cells: a focus on FTICR-MS.

scientific article published on June 2008

Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry

scientific article

Identification of Proteins in Human Cytomegalovirus (HCMV) Particles: the HCMV Proteome

scientific article published in December 2004

Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome

scientific article published on October 2004

Identification of soybean proteins from a single cell type: The root hair ⬇️

scientific article published on November 1, 2012

Identification ofc-Type Heme-Containing Peptides Using Nonactivated Immobilized Metal Affinity Chromatography Resin Enrichment and Higher-Energy Collisional Dissociation

scientific article published on 01 September 2011

In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing

scientific article

In-Situ Metabolomic Analysis of Setaria viridis Roots Colonized by Beneficial Endophytic Bacteria

scientific article published on 06 December 2019

Increasing the Separation Capacity of Intact Histone Proteoforms Chromatography Coupling Online Weak Cation Exchange-HILIC to Reversed Phase LC UVPD-HRMS

scientific article published on 08 October 2018

Informed-Proteomics: open-source software package for top-down proteomics.

scientific article published on 07 August 2017

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry

scientific article published on 19 August 2020

Laser-ablation electrospray ionization mass spectrometry with ion mobility separation reveals metabolites in the symbiotic interactions of soybean roots and rhizobia.

scientific article published on 10 April 2017

Loss of the response regulator CtrA causes pleiotropic effects on gene expression but does not affect growth phase regulation in Rhodobacter capsulatus.

scientific article

MALDI-Mass Spectrometric Imaging Revealing Hypoxia-Driven Lipids and Proteins in a Breast Tumor Model

scientific article published on 4 June 2015

Mapping Influenza-Induced Posttranslational Modifications on Histones from CD8+ T Cells

scientific article published on 08 December 2020

Mass spectrometry of proteins and peptides: methods and protocols. Preface

scientific article published in January 2009

Metabolic Noise and Distinct Subpopulations Observed by Single Cell LAESI Mass Spectrometry of Plant Cells in situ

article

Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism

scientific article published on 15 May 2020

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

scientific article

Micronutrient metal speciation is controlled by competitive organic chelation in grassland soils

scholarly article by Rene M. Boiteau et al published May 2018 in Soil Biology and Biochemistry

Molecular Characterization of Organosulfur Compounds in Biodiesel and Diesel Fuel Secondary Organic Aerosol

scientific article published on 22 December 2016

Molecular tools for investigating ANME community structure and function.

scientific article published in January 2011

Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters

scientific article

Moving beyond the van Krevelen Diagram: A New Stoichiometric Approach for Compound Classification in Organisms

scientific article published on 27 April 2018

Multimodal MSI in conjunction with broad coverage spatially resolved MS2 increases confidence in both molecular identification and localization

scientific article

Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange

scientific article published on 13 June 2018

Online supercritical fluid extraction mass spectrometry (SFE-LC-FTMS) for sensitive characterization of soil organic matter

scientific article published on 01 August 2019

Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems.

scientific article published on December 2008

Platelet proteome changes associated with diabetes and during platelet storage for transfusion

scientific article

Preferential recognition of a microbial metabolite by human Vgamma2Vdelta2 T cells

scientific article published on 19 April 2007

ProForma: A Standard Proteoform Notation.

scientific article published on 5 February 2018

Profiling Changes in Histone Post-translational Modifications by Top-Down Mass Spectrometry

scientific article published in January 2017

Profiling of Histone Post-Translational Modifications in Mouse Brain with High-Resolution Top-Down Mass Spectrometry.

scientific article published on 21 December 2016

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass

scientific article (publication date: 2013)

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

scientific article published on 14 September 2020

Proteomic Profiling of Intact Proteins Using WAX-RPLC 2-D Separations and FTICR Mass Spectrometry

Proteomic profiling of exosomes leads to the identification of novel biomarkers for prostate cancer

scientific article

Quantitative Proteomic Profiling of Low-Dose Ionizing Radiation Effects in a Human Skin Model

scientific article published on 29 July 2014

Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry

scientific article published on 13 April 2014

Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model

scientific article published on 28 April 2017

Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi

scientific article

Rapid quantitative measurements of proteomes by Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 May 2001

Response Surface Methodology As a New Approach for Finding Optimal MALDI Matrix Spraying Parameters for Mass Spectrometry Imaging

scientific article published on 06 February 2020

Retrieval of DNA Using Soft-Landing after Mass Analysis by ESI-FTICR for Enzymatic Manipulation

article

Secondary ion mass spectrometry imaging of Dictyostelium discoideum aggregation streams

scientific article published on 9 June 2014

Sensitive Top-Down Proteomics Analysis of a Low Number of Mammalian Cells Using a Nanodroplet Sample Processing Platform

scientific article published on 06 May 2020

Sequential extraction protocol for organic matter from soils and sediments using high resolution mass spectrometry

scientific article

Siderophore profiling of co-habitating soil bacteria by ultra-high resolution mass spectrometry

scientific article published on 01 January 2019

Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations

scientific article published on 21 April 2020

Site-specific proteomics approach for study protein S-nitrosylation

scientific article published on September 2010

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles

scientific article

Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns

scientific article

Storage conditions of human kidney tissue sections affect spatial lipidomics analysis reproducibility

scientific article published on 08 September 2020

Structural analysis of N- and O-glycans using ZIC-HILIC/dialysis coupled to NMR detection

scientific article published on 10 August 2014

Structural studies of Vgamma2Vdelta2 T cell phosphoantigens.

scientific article

Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples.

scientific article published in September 2017

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.

scientific article published on 26 March 2015

Suppression of the lower charge state ions in the external accumulation RF multipole with a reduced trapping DC potential

scientific article published on 01 November 2003

Surface Induced Dissociation Coupled with High Resolution Mass Spectrometry Unveils Heterogeneity of a 211 kDa Multicopper Oxidase Protein Complex

scientific article published on 31 January 2018

Surface-Induced Dissociation of Protein Complexes in a Hybrid Fourier Transform Ion Cyclotron Resonance Mass Spectrometer.

scientific article published on 15 December 2016

Targeting Metabolic Reprogramming by Influenza Infection for Therapeutic Intervention

scientific article published on May 2017

The first pilot project of the consortium for top-down proteomics: a status report

scientific article

The use of a stable internal mass standard for accurate mass measurements of oligonucleotide fragment ions using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry with infrared multiphoton dissociation

scholarly article by Steven A. Hofstadler et al published 15 October 1998 in Rapid Communications in Mass Spectrometry

The use of accurate mass tags for high-throughput microbial proteomics

scientific article

Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock

scientific article published on 29 June 2011

Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.

scientific article published on 10 March 2013

Top-down analysis of protein samples by de novo sequencing techniques.

scientific article

Top-down mass spectrometry of histone modifications in sorghum reveals potential epigenetic markers for drought acclimation

scientific article published on 23 October 2019

Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.

scientific article

Toward individual glomerular phenotyping: advent of precision medicine in kidney biopsies.

scientific article

Two-dimensional electrophoretic/chromatographic separations combined with electrospray ionization FTICR mass spectrometry for high throughput proteome analysis

Two-dimensional liquid chromatography system for online top-down mass spectrometry

scientific article

Unambiguous identification and discovery of bacterial siderophores by direct injection 21 Tesla Fourier transform ion cyclotron resonance mass spectrometry

scientific article published in December 2016

Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling

scientific article published on July 2006

Utilizing a Robotic Sprayer for High Lateral and Mass Resolution MALDI FT-ICR MSI of Microbial Cultures.

scientific article published on 4 January 2016

Vacuum Ultraviolet Photodissociation and Fourier Transform-Ion Cyclotron Resonance (FT-ICR) Mass Spectrometry: Revisited

scientific article published on 16 February 2016

We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of

scientific article published in 2018

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