List of works by Joel O Wertheim

A case for the ancient origin of coronaviruses

scientific article (publication date: June 2013)

A challenge to the ancient origin of SIVagm based on African green monkey mitochondrial genomes

scientific article (publication date: July 2007)

A glimpse into the origins of genetic diversity in SARS-CoV-2

scientific article published on 04 March 2020

A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies

scientific article published on 24 November 2016

A quick fuse and the emergence of Taura syndrome virus

scientific article published on 13 June 2009

Addressing ethical challenges in US-based HIV phylogenetic research

scientific article published on 11 June 2020

Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes

scientific article published on 20 July 2016

Brief Report: Temporal Changes in HIV Transmission Patterns Among Young Men Who Have Sex With Men, United States, 2009-2016

scientific article published on 01 May 2020

Characteristics of a cohort of high-risk men who have sex with men on pre-exposure prophylaxis reporting transgender sexual partners

scientific article published on 01 December 2019

Comparative analysis of HIV sequences in real time for public health

scientific article published on 01 May 2019

Concurrency and HIV transmission network characteristics among MSM with recent HIV infection

scientific article published on 20 September 2016

Consent and criminalisation concerns over phylogenetic analysis of surveillance data - Authors' reply

scientific article published on 01 July 2019

Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2

scientific article

Detecting individual sites subject to episodic diversifying selection

scientific article

Discovery of Novel Herpes Simplexviruses in Wild Gorillas, Bonobos, and Chimpanzees Supports Zoonotic Origin of HSV-2

scientific article

Dynamics of viral evolution and neutralizing antibody response after HIV-1 superinfection

scientific article published on 18 September 2013

Estimating diversification rates: how useful are divergence times? ⬇️

scientific article (publication date: February 2011)

Ethical considerations in global HIV phylogenetic research

article

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

scientific article published on 3 August 2017

Evolutionary history of chimpanzees inferred from complete mitochondrial genomes

scientific article (publication date: 2011)

Evolutionary origins of human herpes simplex viruses 1 and 2

scientific article

FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences

FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences

scientific article published on 01 June 2019

Gene-wide identification of episodic selection

scientific article published on 19 February 2015

Growth of HIV-1 Molecular Transmission Clusters in New York City

article

HIV Transmission Dynamics among Foreign-born Persons in the United States

scientific article published on 7 September 2017

HIV Transmission Networks in the San Diego-Tijuana Border Region

scientific article

HIV co-infection is associated with increased transmission risk in patients with chronic hepatitis C virus

scientific article published on 04 July 2019

HIV migration between blood and cerebrospinal fluid or semen over time

scientific article published on 02 December 2013

HIV transmission clusters among injecting drug users in Romania

scientific article published in January 2017

HIV transmission networks among transgender women in Los Angeles County, CA, USA: a phylogenetic analysis of surveillance data

scientific article published on 11 February 2019

HIV-TRACE (Transmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens

scientific article published on 31 January 2018

Hepatitis C virus genotype 1 and 2 recombinant genomes and the phylogeographic history of the 2k/1b lineage

scientific article published on 01 July 2019

Identification of major routes of HIV transmission throughout Mesoamerica

scientific article published on 20 June 2017

Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data

article

Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.

scientific article published on 8 November 2016

Incident infection in high-priority HIV molecular transmission clusters in the united states

scientific article published on 13 April 2020

Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy

scientific article

Increasing HIV-1 subtype diversity in seven states, United States, 2006-2013.

scientific article published on 22 February 2017

Intrapatient viral diversity and treatment outcome in patients with genotype 3a hepatitis C virus infection on sofosbuvir-containing regimens

scientific article published on 7 November 2017

Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection

scientific article

Maintenance and reappearance of extremely divergent intra-host HIV-1 variants

article

Molecular analysis allows inference into HIV transmission among young men who have sex with men in the United States

scientific article published on November 2015

Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals

scientific article

Natural selection favoring more transmissible HIV detected in United States molecular transmission network

scientific article published on 19 December 2019

Neuropathy- and myopathy-associated mutations in human small heat shock proteins: Characteristics and evolutionary history of the mutation sites

scientific article

No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men.

scientific article

Phosphoserine acidic cluster motifs bind distinct basic regions on the μ subunits of clathrin adaptor protein complexes

scientific article published in Journal of Biological Chemistry

Phylogenetic relatedness of HIV-1 donor and recipient populations.

scientific article published on 11 January 2013

Phylogeographic analysis reveals an ancient East African origin of human herpes simplex virus 2 dispersal out-of-Africa

scientific article published in 2022

Prevalence of Transmitted HIV Drug Resistance Among Recently Infected Persons in San Diego, CA 1996-2013.

scientific article

Purifying selection can obscure the ancient age of viral lineages

scientific article (publication date: December 2011)

RELAX: detecting relaxed selection in a phylogenetic framework

scientific article

Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference

scientific article

Relaxed selection and the evolution of RNA virus mucin-like pathogenicity factors

scientific article published on 18 February 2009

Short Communication: HIV-1 Transmission Networks Across South Korea.

scientific article published on 27 March 2017

Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc.

scientific article

Social and Genetic Networks of HIV-1 Transmission in New York City

scientific article

Sorting by race/ethnicity across HIV genetic transmission networks in three major metropolitan areas in the United States

scientific article published on 21 December 2020

Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species

scientific article

StrainHub: a phylogenetic tool to construct pathogen transmission networks

scientific article published on 01 February 2020

Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men

scientific article

The Evolutionary Histories of Antiretroviral Proteins SERINC3 and SERINC5 Do Not Support an Evolutionary Arms Race in Primates.

scientific article published on 29 June 2016

The International Dimension of the U.S. HIV Transmission Network and Onward Transmission of HIV Recently Imported into the United States

scientific article published on 22 April 2016

The Origins of SARS-CoV-2: A Critical Review

scholarly article

The Sordid Affair Between Human Herpesvirus and HIV

scientific article

The emergence of SARS-CoV-2 in Europe and North America

scientific article

The emergence of SARS-CoV-2 in Europe and the US

scientific article published on 23 May 2020

The global transmission network of HIV-1

scientific article

The re-emergence of H1N1 influenza virus in 1977: a cautionary tale for estimating divergence times using biologically unrealistic sampling dates

scientific article

The relationship between the HIV-1 transmission network and the HIV care continuum in Los Angeles County

scientific article published on 05 February 2020

Timing the SARS-CoV-2 Index Case in Hubei Province

scientific article published on 24 November 2020

Timing the SARS-CoV-2 index case in Hubei province

scientific article

Transmission Patterns in a Low HIV-Morbidity State - Wisconsin, 2014-2017

article

Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network

scientific article

Understanding disclosed and cryptic HIV transmission risk via genetic analysis: what are we missing and when does it matter?

scientific article published on 01 May 2019

Use of molecular HIV surveillance data and predictive modeling to prioritize persons for transmission-reduction interventions

scientific article published on 01 March 2020

Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, California

scientific article

Using HIV networks to inform real time prevention interventions

scientific article

Using HIV transmission networks to investigate community effects in HIV prevention trials

scientific article

Using Molecular HIV Surveillance Data to Understand Transmission Between Subpopulations in the United States

scientific article

Using phylogeography to characterize the origins of the HIV-1 subtype F epidemic in Romania

scientific article

Viral Evolution: Mummy Virus Challenges Presumed History of Smallpox

scientific article published on February 2017

When pigs fly: the avian origin of a 'swine flu'.

scientific article published in September 2009

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