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List of works by Maxim N Artyomov

143 Identification of Neoantigen-specific CD8+ T Cells in Two Murine Orthotopic Glioblastoma Models Using Cancer Immunogenomics

scientific article

A method for constructing interpretable hidden Markov models for the task of identifying binding cores in sequences

scientific article published in October 2023

A model for genetic and epigenetic regulatory networks identifies rare pathways for transcription factor induced pluripotency

scientific article

Actin polymerization under pressure: a theoretical study

scientific article published on 01 January 2007

An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses

scientific article published on 01 June 2020

An Immunocompetent Mouse Model of Zika Virus Infection.

scientific article published in May 2018

Author Correction: Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease

scientific article published on 14 May 2020

Autophagy Genes Enhance Murine Gammaherpesvirus 68 Reactivation from Latency by Preventing Virus-Induced Systemic Inflammation

scientific article

Autophagy genes in myeloid cells counteract IFNγ-induced TNF-mediated cell death and fatal TNF-induced shock

scientific article published on 25 July 2019

Barrier-to-Autointegration Factor 1 Protects against a Basal cGAS-STING Response

scientific article published on 10 March 2020

Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

scientific article published on 17 May 2018

Bhlhe40 mediates tissue-specific control of macrophage proliferation in homeostasis and type 2 immunity

scientific article published on 06 May 2019

CD4 and CD8 binding to MHC molecules primarily acts to enhance Lck delivery ⬇️

scientific article published on September 13, 2010

Cancer immunogenomic approach to neoantigen discovery in a checkpoint blockade responsive murine model of oral cavity squamous cell carcinoma

scientific article published on 28 December 2017

Cell-intrinsic lysosomal lipolysis is essential for alternative activation of macrophages

scientific article

Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens

scientific article

Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection

scientific article

Comment on "reciprocal relations for nonlinear coupled transport"

scientific article published on 08 April 2009

Comparative evaluation of itaconate and its derivatives reveals divergent inflammasome and type I interferon regulation in macrophages

scientific article published on 25 May 2020

Comparing the biological impact of glatiramer acetate with the biological impact of a generic

scientific article published on 8 January 2014

Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures

scientific article published on 17 May 2019

Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

scientific article published on 21 November 2020

Compressible models of equilibrium polymerization

scientific article published on 01 November 2005

Coreceptor affinity for MHC defines peptide specificity requirements for TCR interaction with coagonist peptide-MHC.

scientific article published on 12 August 2013

Correction: Defining the Transcriptional and Cellular Landscape of Type 1 Diabetes in the NOD Mouse.

scientific article published on 13 January 2014

Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies

scientific article published on 29 July 2013

Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.

scientific article

Defining the transcriptional and cellular landscape of type 1 diabetes in the NOD mouse

scientific article

Detection of neoantigen-specific T cells following a personalized vaccine in a patient with glioblastoma

scientific article published on 25 January 2019

Dietary Intake Regulates the Circulating Inflammatory Monocyte Pool

scientific article published on 22 August 2019

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

scientific article

Efficient stochastic simulation of reaction-diffusion processes via direct compilation

scientific article

Electrophilic properties of itaconate and derivatives regulate the IκBζ-ATF3 inflammatory axis

scientific article published on 18 April 2018

End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data.

scientific article

Endogenous Neoantigen-Specific CD8 T Cells Identified in Two Glioblastoma Models Using a Cancer Immunogenomics Approach

scientific article published on 31 October 2016

GAM: a web-service for integrated transcriptional and metabolic network analysis.

scientific article published on 20 April 2016

Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival

scientific article

Gene expression studies of a human monocyte cell line identify dissimilarities between differently manufactured glatiramoids

scientific article

High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy

article

High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy

scientific article published on 01 November 2018

Homeostatic Control of Innate Lung Inflammation by Vici Syndrome Gene Epg5 and Additional Autophagy Genes Promotes Influenza Pathogenesis

scientific article

Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease

scientific article published on 13 January 2020

IL-1-induced Bhlhe40 identifies pathogenic T helper cells in a model of autoimmune neuroinflammation.

scientific article published on February 2016

Immunometabolism in the Single-Cell Era

scientific article published on 29 September 2020

In vivo imaging of T cell priming

scientific article published on 25 March 2008

Integrating immunometabolism and macrophage diversity

scientific article published on 19 October 2016

Interaction of Streptavidin-Based Peptide–MHC Oligomers (Tetramers) with Cell-Surface TCRs ⬇️

scientific article published on November 18, 2011

Interferon lambda protects the female reproductive tract against Zika virus infection

scientific article published in Nature Communications

Interferon-λ cures persistent murine norovirus infection in the absence of adaptive immunity

scientific article

Interleukin-17 limits hypoxia-inducible factor 1α and development of hypoxic granulomas during tuberculosis

scientific article published on 5 October 2017

Irg1 expression in myeloid cells prevents immunopathology during M. tuberculosis infection

scientific article published on 06 March 2018

Itaconate Links Inhibition of Succinate Dehydrogenase with Macrophage Metabolic Remodeling and Regulation of Inflammation

scientific article published on 28 June 2016

Itaconate confers tolerance to late NLRP3 inflammasome activation

scientific article

Itaconate: the poster child of metabolic reprogramming in macrophage function

scientific article published on 01 May 2019

Ketogenesis activates metabolically protective γδ T cells in visceral adipose tissue

scientific article published on 20 January 2020

Ketogenesis restrains aging-induced exacerbation of COVID in a mouse model

scientific article published on 12 September 2020

LKB1 expressed in dendritic cells governs the development and expansion of thymus-derived regulatory T cells

scientific article published on 02 April 2019

Leveraging existing data sets to generate new insights into Alzheimer's disease biology in specific patient subsets

scientific article

Limited proliferation capacity of aortic intima resident macrophages requires monocyte recruitment for atherosclerotic plaque progression

scientific article published on 07 September 2020

MHC-II neoantigens shape tumour immunity and response to immunotherapy

scientific article published on 23 October 2019

Methionine Metabolism Shapes T Helper Cell Responses through Regulation of Epigenetic Reprogramming

scientific article published on 01 February 2020

Mitochondrial Phosphoenolpyruvate Carboxykinase Regulates Metabolic Adaptation and Enables Glucose-Independent Tumor Growth.

scientific article published on October 2015

Modular expression analysis reveals functional conservation between human Langerhans cells and mouse cross-priming dendritic cells.

scientific article published on 27 April 2015

Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes.

scientific article published on 17 September 2018

Myeloid cell interferon responses correlate with clearance of SARS-CoV-2

scientific article published on 03 February 2022

Myocardial B cells are a subset of circulating lymphocytes with delayed transit through the heart

scientific article published on 13 February 2020

Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization

scientific article

Non-canonical glutamine transamination sustains efferocytosis by coupling redox buffering to oxidative phosphorylation

scientific article published on 14 October 2021

Opposing Roles of Dendritic Cell Subsets in Experimental GN.

scientific article

Polyreactivity increases the apparent affinity of anti-HIV antibodies by heteroligation

scientific article published on September 2010

Publisher Correction: Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes

scientific article published on 01 November 2018

Publisher Correction: Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

scientific article published on 01 October 2019

Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities

scholarly article

Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors

scientific article published on 01 November 2020

STING Gain-of-Function Disrupts Lymph Node Organogenesis and Innate Lymphoid Cell Development in Mice

scientific article published on 01 June 2020

Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes

scientific article published on 20 January 2020

Single-cell RNA-seq analysis of human CSF microglia and myeloid cells in neuroinflammation

scientific article published on 05 May 2020

Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions

scientific article published on 26 March 2021

Solutions of burnt-bridge models for molecular motor transport

scientific article published on 21 March 2007

Stochastic bimodalities in deterministically monostable reversible chemical networks due to network topology reduction

scientific article

Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses.

scientific article published on 30 June 2017

Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

scientific article published on 17 June 2019

Systematic discovery of TLR signaling components delineates viral-sensing circuits

scientific article

T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation

scientific article published on 20 January 2008

TLR-driven early glycolytic reprogramming via the kinases TBK1-IKKɛ supports the anabolic demands of dendritic cell activation

scientific article

TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease

scientific article published on August 2017

TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy

scientific article published on 06 August 2020

Targeted chromatin profiling reveals novel enhancers in Ig H and Ig L chain Loci.

scientific article published on 18 December 2013

Targeting dendritic cells to accelerate T-cell activation overcomes a bottleneck in tuberculosis vaccine efficacy

scientific article

The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid-Type I IFN Signaling Axis

scientific article published on 08 July 2020

The immune landscape in tuberculosis reveals populations linked to disease and latency

scientific article published on 16 December 2020

The islet-resident macrophage is in an inflammatory state and senses microbial products in blood.

scientific article

The miR-17∼92 microRNA Cluster Is a Global Regulator of Tumor Metabolism.

scientific article published on 3 August 2016

The microbial metabolite desaminotyrosine protects from influenza through type I interferon.

scientific article

Tissue Resident CCR2- and CCR2+ Cardiac Macrophages Differentially Orchestrate Monocyte Recruitment and Fate Specification Following Myocardial Injury

scientific article published on 01 January 2019

Tissue-resident natural killer (NK) cells are cell lineages distinct from thymic and conventional splenic NK cells

scientific article published on January 2014

Tonic TCR Signaling Inversely Regulates the Basal Metabolism of CD4+ T Cells

scientific article published on 07 August 2020

Transcriptome Analysis Reveals Nonfoamy Rather Than Foamy Plaque Macrophages Are Proinflammatory in Atherosclerotic Murine Models

scientific article published on 01 October 2018

Tumor neoantigens: building a framework for personalized cancer immunotherapy

scientific article

Type 1 Interferons Induce Changes in Core Metabolism that Are Critical for Immune Function

scientific article published on June 2016

Unifying model for molecular determinants of the preselection Vβ repertoire

scientific article published on 05 August 2013

infection drives conversion of NK cells into ILC1-like cells

scientific article published on 08 August 2019

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