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List of works by Marie-Agnès Jacques

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Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics.

scientific article
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article
Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

scientific article published on June 2016
Evolutionary history of the plant pathogenic bacterium Xanthomonas axonopodis

scientific article
Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

scientific article
High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis.

scientific article published on 13 June 2013
Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

scientific article
Terroir is a key driver of seed-associated microbial assemblages.

scientific article
Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads.

scientific article
Transmission of Plant-Pathogenic Bacteria by Nonhost Seeds without Induction of an Associated Defense Reaction at Emergence

scientific article published on August 20, 2010
The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts.

scientific article
Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

scientific article
Ecological patterns of seed microbiome diversity, transmission, and assembly

scientific article
Adhesion mechanisms of plant-pathogenic Xanthomonadaceae

scientific article published on January 2011
Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation.

scientific article published on 22 December 2015
Phylogenetic analysis and polyphasic characterization of Clavibacter michiganensis strains isolated from tomato seeds reveal that nonpathogenic strains are distinct from C. michiganensis subsp. michiganensis

scientific article
New Coffee Plant-Infecting Xylella fastidiosa Variants Derived via Homologous Recombination

scientific article published on 28 December 2015
High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

scientific article published on 12 February 2015
Phylogenetic and Variable-Number Tandem-Repeat Analyses Identify Nonpathogenic Xanthomonas arboricola Lineages Lacking the Canonical Type III Secretion System

scientific article published on 5 June 2015
Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing

scientific article
Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

scientific article
Development of multilocus variable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars.

scientific article published on 12 March 2014
Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms.

scientific article published on 11 April 2016
Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

scientific article
Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads.

scientific article published on 28 April 2015
Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

scientific article published on 29 June 2018
Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

scientific article published on 4 September 2017
Genomic Analysis of Clavibacter michiganensis Reveals Insight Into Virulence Strategies and Genetic Diversity of a Gram-Positive Bacterial Pathogen

scientific article published on 5 July 2017
Phenoplant: a web resource for the exploration of large chlorophyll fluorescence image datasets

scientific article published on April 3, 2015
Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems

scientific article published on 5 April 2016
High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

scientific article published on 29 August 2013
Plant microbiota affects seed transmission of phytopathogenic microorganisms

scientific article published on 5 February 2016
Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

article
Identification of genetic relationships and subspecies signatures in Xylella fastidiosa

scientific article published on 25 March 2019
Draft Genome Sequence of Xanthomonas translucens pv. graminis Pathotype Strain CFBP 2053.

scientific article published on 8 October 2015
Pest categorisation of Aleurocanthus spp

scientific article published on 29 October 2018
First Complete Genome Sequences of Xanthomonas citri pv. vignicola Strains CFBP7111, CFBP7112, and CFBP7113 Obtained Using Long-Read Technology.

scientific article published on 7 September 2017
Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.

scientific article published on 17 September 2015
Draft Genome Sequences of the Type Strains of Three Subspecies and Atypical Peach-Colored Strains Isolated from Tomato

scientific article published on 08 November 2018
Genotypic diversity of Lactobacillus sanfranciscensis strains isolated from French organic sourdoughs.

scientific article
Guidance on commodity risk assessment for the evaluation of high risk plants dossiers

scientific article published on 29 April 2019
Commodity risk assessment of black pine (Pinus thunbergii Parl.) bonsai from Japan

scientific article published on 15 May 2019
Comparative Genomics and Phylogenetic Analyses Suggest Several Novel Species within the Genus Clavibacter, Including Nonpathogenic Tomato-Associated Strains

scientific article published on 02 March 2020
Novel Tetraplex Quantitative PCR Assays for Simultaneous Detection and Identification of Xylella fastidiosa Subspecies in Plant Tissues

scientific article published on 27 December 2019
Correction to: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

scientific article published on 23 September 2020
Role of the acquisition of a type 3 secretion system in the emergence of novel pathogenic strains of Xanthomonas

scientific article published on 26 October 2018
High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

scientific article
pv. Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen

article
Effectiveness of in planta control measures for Xylella fastidiosa

scientific article published on 15 May 2019
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

scientific article published on 18 August 2020

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