List of works by Hosein Mohimani

A Metabolome- and Metagenome-Wide Association Network Reveals Microbial Natural Products and Microbial Biotransformation Products from the Human Microbiota

scientific article published on 27 August 2019

A new approach to evaluating statistical significance of spectral identifications

scientific article published on 8 March 2013

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Automated genome mining of ribosomal peptide natural products

scientific article

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

scientific article published on 03 June 2019

Cycloquest: identification of cyclopeptides via database search of their mass spectra against genome databases

scientific article

Cytotoxic veraguamides, alkynyl bromide-containing cyclic depsipeptides from the marine cyanobacterium cf. Oscillatoria margaritifera. ⬇️

scientific article

De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments

scientific article published on 18 December 2019

Dereplication of microbial metabolites through database search of mass spectra

scientific article published in Nature Communications

Dereplication of peptidic natural products through database search of mass spectra

scientific article

Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks

scientific article

Feature-based molecular networking in the GNPS analysis environment

scientific article published on 24 August 2020

HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search

scientific article published in 2023

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra.

scientific article published on 22 January 2018

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

scientific article published on 28 May 2021

Linking genomics and metabolomics to chart specialized metabolic diversity

scientific article published on 12 May 2020

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

scientific article published on 16 October 2019

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

scientific article

MolDiscovery: learning mass spectrometry fragmentation of small molecules

scientific article published on 17 June 2021

Multiplex de novo sequencing of peptide antibiotics

scientific article published on 28 October 2011

NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery

scientific article

Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides

scientific article published on 11 October 2021

Sequencing cyclic peptides by multistage mass spectrometry

scientific article

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

scientific article (publication date: 9 August 2016)

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

scientific article (publication date: 20 December 2016)

microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data ⬇️

scientific article published in 2024

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