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List of works by Shoji Takada

Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations

scientific article published on 11 September 2017

Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA

scientific article published on 05 November 2018

Coarse-grained implicit solvent lipid force field with a compatible resolution to the Cα protein representation

scientific article published on 01 November 2020

Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations

scientific article published on 22 January 2020

Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations

scientific article published on 05 April 2022

Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy

scientific article published on 30 July 2021

Semi-Implicit Time Integration with Hessian Eigenvalue Corrections for a Larger Time Step in Molecular Dynamics Simulations

scientific article published on 05 August 2021

The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study

scientific article published on 27 July 2021

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