List of works - Joana F Salles

A Microbial Community Ecology Perspective on the Gut-Microbiome-Brain Axis

scientific article published on 02 September 2020

Abundance and genetic diversity of nifH gene sequences in anthropogenically affected Brazilian mangrove sediments

scientific article

Application of a novel Paenibacillus-specific PCR-DGGE method and sequence analysis to assess the diversity of Paenibacillus spp. in the maize rhizosphere

scientific article

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

scientific article published on 06 April 2017

Bacterial Communities Differ among Drosophila melanogaster Populations and Affect Host Resistance against Parasitoids

scientific article

Bacterial Synergism in Lignocellulose Biomass Degradation - Complementary Roles of Degraders As Influenced by Complexity of the Carbon Source

scientific article published on 10 October 2017

Bacterial communities in soil become sensitive to drought under intensive grazing

scientific article published on 17 October 2017

Bacterial community dynamics varies with soil management and irrigation practices in grapevines (Vitis vinifera L.)

scientific article published in 2021

Bio‐organic soil amendment promotes the suppression of <i>Ralstonia solanacearum</i> by inducing changes in the functionality and composition of rhizosphere bacterial communities

scientific article published in 2022

Bridging ecological assembly process and community stability upon bacterial invasions

Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil

scientific article

Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil

scientific article

Community Assembly Processes of the Microbial Rare Biosphere.

scientific article published on 14 March 2018

Community niche predicts the functioning of denitrifying bacterial assemblages

scientific article

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing ⬇️

scientific article published on August 19, 2011

Comparative Genome Analysis of the Lignocellulose Degrading Bacteria Citrobacter freundii so4 and Sphingobacterium multivorum w15

scientific article published on 03 March 2020

Comparing the Influence of Assembly Processes Governing Bacterial Community Succession Based on DNA and RNA Data

scientific article published on 26 May 2020

Compositional and abundance changes of nitrogen-cycling genes in plant-root microbiomes along a salt marsh chronosequence

article

Construction of Effective Minimal Active Microbial Consortia for Lignocellulose Degradation

scientific article published in February 2018

Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut.

scientific article published on 13 July 2016

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution.

scientific article

Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants.

scientific article published in December 2006

Culture-independent assessment of Rhizobiales-related alphaproteobacteria and the diversity of Methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus

scientific article

Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities

scientific article published on 25 June 2020

Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils.

scientific article published on 12 June 2017

Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity

scientific article

Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines.

scientific article published on 03 July 2013

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

scientific article

Dispersal mitigates bacterial dominance over microalgal competitor in metacommunities

scientific article published on 09 July 2020

Dispersal-competition tradeoff in microbiomes in the quest for land colonization.

scientific article

Distribution of Root-Associated Bacterial Communities Along a Salt-Marsh Primary Succession

scientific article published in January 2015

Dynamics of Abundant and Rare Bacteria During Degradation of Lignocellulose from Sugarcane Biomass

scientific article published on 08 July 2019

Dynamics of bacterial and fungal communities associated with eggshells during incubation

scientific article published on 08 March 2014

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

scientific article

Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia

scientific article

Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities

scientific article published on 29 January 2016

Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity

scientific article

Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens

scientific article

Effects of plant genotype and growth stage on the betaproteobacterial communities associated with different potato cultivars in two fields.

scientific article

Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH ⬇️

scientific article published on March 2, 2012

Functional Redundancy and Ecosystem Function — The Soil Microbiota as a Case Study

Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession

scientific article published on 30 October 2017

Gut microbiota of homing pigeons shows summer-winter variation under constant diet indicating a substantial effect of temperature

Gut-Microbiome Composition in Response to Phenylketonuria Depends on Dietary Phenylalanine in BTBR Pah Mice

Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate

scientific article published on 3 February 2018

Host, Symbionts, and the Microbiome: The Missing Tripartite Interaction

scientific article published on 08 March 2019

Houseflies harbor less diverse microbiota under laboratory conditions but maintain a consistent set of host-associated bacteria

Inoculated microbial consortia perform better than single strains in living soil: A meta-analysis

scientific article published in 2023

Interactions between Bacterial Inoculants and Native Soil Bacterial Community: the Case of Spore-forming Bacillus spp

Invasive plant species set up their own niche

scientific article published in November 2014

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation

scientific article published on 25 September 2017

Light induced intraspecific variability in response to thermal stress in the hard coral Stylophora pistillata

scientific article published on 11 October 2017

Linking Bacterial Communities Associated with the Environment and the Ecosystem Engineer Orchestia gammarellus at Contrasting Salt Marsh Elevations

scientific article published on 09 January 2021

Lose-lose consequences of bacterial community-driven invasions in soil

Microbe-mediated processes as indicators to establish the normal operating range of soil functioning

scientific article published in 2013

Microbial diversity determines the invasion of soil by a bacterial pathogen

scientific article

Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

Microbial invasions: the process, patterns, and mechanisms

scientific article published on 9 September 2015

Microbiome Heritability and Its Role in Adaptation of Hosts to Novel Resources

Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails

scientific article published on 24 October 2020

Microbiome assembly of avian eggshells and their potential as transgenerational carriers of maternal microbiota

scientific article published on 14 February 2018

Molecular method to assess the diversity of Burkholderia species in environmental samples

scientific article

More persistent bacterial than fungal associations in the microbiota of a pest insect

scientific article published in 2022

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks.

scientific article

Multivariate analyses of Burkholderia species in soil: effect of crop and land use history

scientific article published on July 2004

Normal operating range of bacterial communities in soil used for potato cropping

scientific article

Organic Amendment Under Increasing Agricultural Intensification: Effects on Soil Bacterial Communities and Plant Productivity

article

Prenatal Transfer of Gut Bacteria in Rock Pigeon

scientific article published on 30 December 2019

Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays

scientific article

Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem

scientific article

Relating Phylogenetic and Functional Diversity among Denitrifiers and Quantifying their Capacity to Predict Community Functioning

scientific article

Resource pulses can alleviate the biodiversity-invasion relationship in soil microbial communities

scientific article published on April 2015

Rhizosphere bacteria assembly derived from fumigation and organic amendment triggers the direct and indirect suppression of tomato bacterial wilt disease ⬇️

scholarly article

Rhizosphere suppression hinders antibiotic resistance gene (ARG) spread under bacterial invasion.

scientific article published in 2023

Salt Marsh Elevation Drives Root Microbial Composition of the Native Invasive Grass Elytrigia atherica ⬇️

scientific article published on 21 October 2020

Seasonal variations in the diversity and abundance of diazotrophic communities across soils

scientific article

Serotonin Transporter Genotype Modulates the Gut Microbiota Composition in Young Rats, an Effect Augmented by Early Life Stress

scientific article

Shifts in bacterial communities of eggshells and antimicrobial activities in eggs during incubation in a ground-nesting passerine

scientific article

Soil Microbial Diversity Affects the Plant-Root Colonization by Arbuscular Mycorrhizal Fungi

scientific article published on 21 March 2020

Soil and cultivar type shape the bacterial community in the potato rhizosphere

scientific article

Soil bacteria show different tolerance ranges to an unprecedented disturbance

Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands

scientific article

Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum

Soil mycobiome in sustainable agriculture

scientific article published in 2022

Soil pH and microbial diversity constrain the survival of E. coli in soil

scientific article published in 2019

Spatial and temporal variation of archaeal, bacterial and fungal communities in agricultural soils

scientific article

Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont

scientific article published on 11 January 2018

Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence

article

Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse

scientific article published on 26 February 2018

Temporal dynamics of abundance and composition of nitrogen-fixing communities across agricultural soils

scientific article

Temporal dynamics of the soil bacterial community following Bacillus invasion

scientific article published on 01 April 2022

The Gut Microbiome and Metabolome of Two Riparian Communities in the Amazon

scientific article published on 04 September 2019

The Macroalgal Holobiont in a Changing Sea

scientific article published on 02 May 2019

The Role of Rhizosphere Bacteriophages in Plant Health

scientific article published on 13 May 2020

The impact of protozoa addition on the survivability of Bacillus inoculants and soil microbiome dynamics

The legacy of bacterial invasions on soil native communities

scientific article published on 17 May 2020

The legacy of microbial inoculants in agroecosystems and potential for tackling climate change challenges

The microbial environment modulates non-genetic maternal effects on egg immunity

Unravelling the interplay of ecological processes structuring the bacterial rare biosphere

Where less may be more: how the rare biosphere pulls ecosystems strings

scientific article

List of works by Joana F Salles

A Microbial Community Ecology Perspective on the Gut-Microbiome-Brain Axis

Abundance and genetic diversity of nifH gene sequences in anthropogenically affected Brazilian mangrove sediments

Application of a novel Paenibacillus-specific PCR-DGGE method and sequence analysis to assess the diversity of Paenibacillus spp. in the maize rhizosphere

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

Bacterial Communities Differ among Drosophila melanogaster Populations and Affect Host Resistance against Parasitoids

Bacterial Synergism in Lignocellulose Biomass Degradation - Complementary Roles of Degraders As Influenced by Complexity of the Carbon Source

Bacterial communities in soil become sensitive to drought under intensive grazing

Bacterial community dynamics varies with soil management and irrigation practices in grapevines (Vitis vinifera L.)

Bio‐organic soil amendment promotes the suppression of <i>Ralstonia solanacearum</i> by inducing changes in the functionality and composition of rhizosphere bacterial communities

Bridging ecological assembly process and community stability upon bacterial invasions

Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil

Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil

Community Assembly Processes of the Microbial Rare Biosphere.

Community niche predicts the functioning of denitrifying bacterial assemblages

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing ⬇️

Comparative Genome Analysis of the Lignocellulose Degrading Bacteria Citrobacter freundii so4 and Sphingobacterium multivorum w15

Comparing the Influence of Assembly Processes Governing Bacterial Community Succession Based on DNA and RNA Data

Compositional and abundance changes of nitrogen-cycling genes in plant-root microbiomes along a salt marsh chronosequence

Construction of Effective Minimal Active Microbial Consortia for Lignocellulose Degradation

Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut.

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution.

Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants.

Culture-independent assessment of Rhizobiales-related alphaproteobacteria and the diversity of Methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus

Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities

Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils.

Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity

Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines.

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

Dispersal mitigates bacterial dominance over microalgal competitor in metacommunities

Dispersal-competition tradeoff in microbiomes in the quest for land colonization.

Distribution of Root-Associated Bacterial Communities Along a Salt-Marsh Primary Succession

Dynamics of Abundant and Rare Bacteria During Degradation of Lignocellulose from Sugarcane Biomass

Dynamics of bacterial and fungal communities associated with eggshells during incubation

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia

Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities

Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity

Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens

Effects of plant genotype and growth stage on the betaproteobacterial communities associated with different potato cultivars in two fields.

Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH ⬇️

Functional Redundancy and Ecosystem Function — The Soil Microbiota as a Case Study

Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession

Gut microbiota of homing pigeons shows summer-winter variation under constant diet indicating a substantial effect of temperature

Gut-Microbiome Composition in Response to Phenylketonuria Depends on Dietary Phenylalanine in BTBR Pah Mice

Gut-Microbiome Composition in Response to Phenylketonuria Depends on Dietary Phenylalanine in BTBR Pah Mice

Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate

Host, Symbionts, and the Microbiome: The Missing Tripartite Interaction

Houseflies harbor less diverse microbiota under laboratory conditions but maintain a consistent set of host-associated bacteria

Houseflies harbor less diverse microbiota under laboratory conditions but maintain a consistent set of host-associated bacteria

Inoculated microbial consortia perform better than single strains in living soil: A meta-analysis

Interactions between Bacterial Inoculants and Native Soil Bacterial Community: the Case of Spore-forming Bacillus spp

Invasive plant species set up their own niche

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation

Light induced intraspecific variability in response to thermal stress in the hard coral Stylophora pistillata

Linking Bacterial Communities Associated with the Environment and the Ecosystem Engineer Orchestia gammarellus at Contrasting Salt Marsh Elevations

Lose-lose consequences of bacterial community-driven invasions in soil

Microbe-mediated processes as indicators to establish the normal operating range of soil functioning

Microbial diversity determines the invasion of soil by a bacterial pathogen

Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

Microbial invasions: the process, patterns, and mechanisms

Microbiome Heritability and Its Role in Adaptation of Hosts to Novel Resources

Microbiome Heritability and Its Role in Adaptation of Hosts to Novel Resources

Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails

Microbiome assembly of avian eggshells and their potential as transgenerational carriers of maternal microbiota

Molecular method to assess the diversity of Burkholderia species in environmental samples

More persistent bacterial than fungal associations in the microbiota of a pest insect

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks.

Multivariate analyses of Burkholderia species in soil: effect of crop and land use history

Normal operating range of bacterial communities in soil used for potato cropping

Organic Amendment Under Increasing Agricultural Intensification: Effects on Soil Bacterial Communities and Plant Productivity

Prenatal Transfer of Gut Bacteria in Rock Pigeon

Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays

Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem

Relating Phylogenetic and Functional Diversity among Denitrifiers and Quantifying their Capacity to Predict Community Functioning

Resource pulses can alleviate the biodiversity-invasion relationship in soil microbial communities

Rhizosphere bacteria assembly derived from fumigation and organic amendment triggers the direct and indirect suppression of tomato bacterial wilt disease ⬇️

Rhizosphere suppression hinders antibiotic resistance gene (ARG) spread under bacterial invasion.

Salt Marsh Elevation Drives Root Microbial Composition of the Native Invasive Grass Elytrigia atherica ⬇️