List of works - Gregory A Buck

A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection.

scientific article

A genome-scale metabolic model of Cryptosporidium hominis

scientific article

A high-throughput cloning system for reverse genetics in Trypanosoma cruzi

scientific article

A new era of the vaginal microbiome: advances using next-generation sequencing.

scientific article

An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease.

scientific article

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity.

scientific article published on 28 August 2017

Automated system for gene annotation and metabolic pathway reconstruction using general sequence databases

scientific article

BOTUX: bayesian-like operational taxonomic unit examiner.

scientific article

Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses

scientific article

Cell sorting-assisted microarray profiling of host cell response to Cryptosporidium parvum infection

scientific article

Changes in vaginal community state types reflect major shifts in the microbiome

scientific article

Clostridium scindens: a human gut microbe with a high potential to convert glucocorticoids into androgens

scientific article

Comparative genomics of cryptosporidium.

scientific article published on 2 May 2013

Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria.

scientific article published on 8 January 2016

Cryptosporidium Priming Is More Effective than Vaccine for Protection against Cryptosporidiosis in a Murine Protein Malnutrition Model

scientific article

Cryptosporidium hominis infection of the human respiratory tract

scientific article published on March 2007

Differences in vaginal microbiome in African American women versus women of European ancestry.

scientific article

Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real-time PCR, 16S rRNA gene sequencing, and metagenomics

Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies

scientific article

Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides Demonstrates Different Alloreactivity Potential in HLA-Matched and -Mismatched Donor-Recipient Pairs.

scientific article published on 11 December 2015

Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following stem cell transplantation.

scientific article published in December 2017

Effects of combined oral contraceptives, depot medroxyprogesterone acetate and the levonorgestrel-releasing intrauterine system on the vaginal microbiome.

scientific article published on 29 November 2016

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

scientific article

Erratum: Corrigendum: The genome of Cryptosporidium hominis

scientific article published in Nature

Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype

scientific article

Evolution of metabolic network organization

scientific article

Expression profile of interferon stimulated genes in central nervous system of mice infected with dengue virus Type-1.

scientific article

Functional genomic characterization of mRNAs associated with TcPUF6, a pumilio-like protein from Trypanosoma cruzi.

scientific article published on 04 December 2007

Functional organization of the yeast proteome by a yeast interactome map

scholarly article

Genetic diversity of Trypanosoma cruzi in bats, and multilocus phylogenetic and phylogeographical analyses supporting Tcbat as an independent DTU (discrete typing unit).

scientific article published on 19 July 2015

Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas

scientific article

Genome of the opportunistic pathogen Streptococcus sanguinis

scientific article

Genome-wide essential gene identification in Streptococcus sanguinis ⬇️

scientific article published on October 20, 2011

Genome-wide identification of evolutionarily conserved Small Heat-Shock and eight other proteins bearing α-crystallin domain-like in kinetoplastid protists

scientific article published in PLoS ONE

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence

scientific article published on 24 October 2018

Genomic sequence analysis and characterization of Sneathia amnii sp. nov

scientific article

Gut Colonization with Methanogenic Archaea Lowers Plasma Trimethylamine N-oxide Concentrations in Apolipoprotein e-/- Mice

scientific article published in Scientific Reports

Identification and characterization of a novel calcium-activated apyrase from Cryptosporidium parasites and its potential role in pathogenesis

scientific article

Identification and immunological characterization of three potential vaccinogens against Cryptosporidium species.

scientific article published on 14 September 2011

Identification and phylogenetic analysis of heme synthesis genes in trypanosomatids and their bacterial endosymbionts.

scientific article

Identification of a gene in Mycoplasma hominis associated with preterm birth and microbial burden in intraamniotic infection

scientific article published on 28 January 2015

Impact of Herpes Simplex Virus Type 2 and Human Immunodeficiency Virus Dual Infection on Female Genital Tract Mucosal Immunity and the Vaginal Microbiome

scientific article published on 01 July 2019

In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiology of Allogeneic Transplantation

scientific article

Integrating genome-scale data for gene essentiality prediction

scientific article

Intranasal vaccination in mice with an attenuated Salmonella enterica Serovar 908htr A expressing Cp15 of Cryptosporidium: impact of malnutrition with preservation of cytokine secretion

scientific article

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

scientific article

Modeling biochemical networks: a cellular-automata approach

scientific article

Over-expression and localization of a host protein on the membrane of Cryptosporidium parvum infected epithelial cells.

scientific article published on 22 July 2009

Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences

scientific article

Phylogenetic distances are encoded in networks of interacting pathways

scientific article published on 26 September 2008

Protein and mRNA content of TcDHH1-containing mRNPs in Trypanosoma cruzi

scientific article published on 12 July 2010

Proteomic analysis reveals the dynamic association of proteins with translated mRNAs in Trypanosoma cruzi

scientific article published on 7 January 2010

Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi

scientific article

Putative cis-regulatory elements associated with heat shock genes activated during excystation of Cryptosporidium parvum.

scientific article

Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy

scientific article published on 29 May 2019

Relationship between vitamin D status and the vaginal microbiome during pregnancy

scientific article published on 11 March 2019

Repertoire, genealogy and genomic organization of cruzipain and homologous genes in Trypanosoma cruzi, T. cruzi-like and other trypanosome species.

scientific article

Revisiting the reference genomes of human pathogenic Cryptosporidium species: reannotation of C. parvum Iowa and a new C. hominis reference

scientific article

Sequence homology between HLA-bound cytomegalovirus and human peptides: A potential trigger for alloreactivity

scientific article published on 11 August 2017

Sera of chagasic patients react with antigens from the tomato parasite Phytomonas serpens

scientific article published on September 24, 2010

Skin-to-Skin Care and the Development of the Preterm Infant Oral Microbiome

scientific article published on 22 May 2015

Species-level classification of the vaginal microbiome

scientific article

Stem cell transplantation as a dynamical system: are clinical outcomes deterministic?

scientific article

Systems Biology: Molecular Networks and Disease ⬇️

scientific article published on 01 May 2012

Systems biology in the microbial world and beyond

scientific article published on 01 May 2010

T-bet-dependent regulation of CD8+ T-cell expansion during experimental Trypanosoma cruzi infection

scientific article published on 4 August 2009

The Evolutionary Loss of RNAi Key Determinants in Kinetoplastids as a Multiple Sporadic Phenomenon

scientific article published on 16 February 2017

The Vaginal Microbiome: Disease, Genetics and the Environment

article

The changing landscape of the vaginal microbiome

scientific article

The genome of Cryptosporidium hominis

scientific article

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

scientific article

The vaginal microbiome and preterm birth

scientific article published on 29 May 2019

Trypanosoma cruzi Infection Induces a Global Host Cell Response in Cardiomyocytes

scientific article published in 2011

Trypanosoma cruzi infection induces a global host cell response in cardiomyocytes

scientific article

Trypanosoma rangeli is phylogenetically closer to Old World trypanosomes than to Trypanosoma cruzi.

scientific article published on 12 March 2018

Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation

scientific article

List of works by Gregory A Buck

A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection.

A genome-scale metabolic model of Cryptosporidium hominis

A high-throughput cloning system for reverse genetics in Trypanosoma cruzi

A new era of the vaginal microbiome: advances using next-generation sequencing.

An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease.

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity.

Automated system for gene annotation and metabolic pathway reconstruction using general sequence databases

BOTUX: bayesian-like operational taxonomic unit examiner.

Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses

Cell sorting-assisted microarray profiling of host cell response to Cryptosporidium parvum infection

Changes in vaginal community state types reflect major shifts in the microbiome

Clostridium scindens: a human gut microbe with a high potential to convert glucocorticoids into androgens

Comparative genomics of cryptosporidium.

Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria.

Cryptosporidium Priming Is More Effective than Vaccine for Protection against Cryptosporidiosis in a Murine Protein Malnutrition Model

Cryptosporidium hominis infection of the human respiratory tract

Differences in vaginal microbiome in African American women versus women of European ancestry.

Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real-time PCR, 16S rRNA gene sequencing, and metagenomics

Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies

Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides Demonstrates Different Alloreactivity Potential in HLA-Matched and -Mismatched Donor-Recipient Pairs.

Dynamical system modeling to simulate donor T cell response to whole exome sequencing-derived recipient peptides: Understanding randomness in alloreactivity incidence following stem cell transplantation.

Effects of combined oral contraceptives, depot medroxyprogesterone acetate and the levonorgestrel-releasing intrauterine system on the vaginal microbiome.

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

Erratum: Corrigendum: The genome of Cryptosporidium hominis

Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype

Evolution of metabolic network organization

Expression profile of interferon stimulated genes in central nervous system of mice infected with dengue virus Type-1.

Functional genomic characterization of mRNAs associated with TcPUF6, a pumilio-like protein from Trypanosoma cruzi.

Functional organization of the yeast proteome by a yeast interactome map

Genetic diversity of Trypanosoma cruzi in bats, and multilocus phylogenetic and phylogeographical analyses supporting Tcbat as an independent DTU (discrete typing unit).

Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas

Genome of the opportunistic pathogen Streptococcus sanguinis

Genome-wide essential gene identification in Streptococcus sanguinis ⬇️

Genome-wide identification of evolutionarily conserved Small Heat-Shock and eight other proteins bearing α-crystallin domain-like in kinetoplastid protists

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence

Genomic sequence analysis and characterization of Sneathia amnii sp. nov

Gut Colonization with Methanogenic Archaea Lowers Plasma Trimethylamine N-oxide Concentrations in Apolipoprotein e-/- Mice

Identification and characterization of a novel calcium-activated apyrase from Cryptosporidium parasites and its potential role in pathogenesis

Identification and immunological characterization of three potential vaccinogens against Cryptosporidium species.

Identification and phylogenetic analysis of heme synthesis genes in trypanosomatids and their bacterial endosymbionts.

Identification of a gene in Mycoplasma hominis associated with preterm birth and microbial burden in intraamniotic infection

Impact of Herpes Simplex Virus Type 2 and Human Immunodeficiency Virus Dual Infection on Female Genital Tract Mucosal Immunity and the Vaginal Microbiome

In silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem-Cell Transplant Donors and Recipients: Understanding the Quantitative Immunobiology of Allogeneic Transplantation

Integrating genome-scale data for gene essentiality prediction

Intranasal vaccination in mice with an attenuated Salmonella enterica Serovar 908htr A expressing Cp15 of Cryptosporidium: impact of malnutrition with preservation of cytokine secretion

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

Modeling biochemical networks: a cellular-automata approach

Over-expression and localization of a host protein on the membrane of Cryptosporidium parvum infected epithelial cells.

Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences

Phylogenetic distances are encoded in networks of interacting pathways

Protein and mRNA content of TcDHH1-containing mRNPs in Trypanosoma cruzi

Proteomic analysis reveals the dynamic association of proteins with translated mRNAs in Trypanosoma cruzi

Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi

Putative cis-regulatory elements associated with heat shock genes activated during excystation of Cryptosporidium parvum.

Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy

Relationship between vitamin D status and the vaginal microbiome during pregnancy

Repertoire, genealogy and genomic organization of cruzipain and homologous genes in Trypanosoma cruzi, T. cruzi-like and other trypanosome species.

Revisiting the reference genomes of human pathogenic Cryptosporidium species: reannotation of C. parvum Iowa and a new C. hominis reference

Sequence homology between HLA-bound cytomegalovirus and human peptides: A potential trigger for alloreactivity

Sera of chagasic patients react with antigens from the tomato parasite Phytomonas serpens

Skin-to-Skin Care and the Development of the Preterm Infant Oral Microbiome

Species-level classification of the vaginal microbiome

Stem cell transplantation as a dynamical system: are clinical outcomes deterministic?

Systems Biology: Molecular Networks and Disease ⬇️

Systems biology in the microbial world and beyond

T-bet-dependent regulation of CD8+ T-cell expansion during experimental Trypanosoma cruzi infection

The Evolutionary Loss of RNAi Key Determinants in Kinetoplastids as a Multiple Sporadic Phenomenon

The Vaginal Microbiome: Disease, Genetics and the Environment

The changing landscape of the vaginal microbiome

The genome of Cryptosporidium hominis

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

The vaginal microbiome and preterm birth

Trypanosoma cruzi Infection Induces a Global Host Cell Response in Cardiomyocytes

Trypanosoma cruzi infection induces a global host cell response in cardiomyocytes

Trypanosoma rangeli is phylogenetically closer to Old World trypanosomes than to Trypanosoma cruzi.

Whole exome sequencing to estimate alloreactivity potential between donors and recipients in stem cell transplantation