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List of works by Austin D Swafford

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

scientific article published on 14 November 2020

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults

scientific article published on 14 May 2019

American Gut: an Open Platform for Citizen Science Microbiome Research

article

An allele of IKZF1 (Ikaros) conferring susceptibility to childhood acute lymphoblastic leukemia protects against type 1 diabetes ⬇️

scientific article

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

scientific article published on 18 August 2020

Best practices for analysing microbiomes

scientific article published on 01 July 2018

CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection

scientific article published on 21 September 2020

Challenges in the construction of knowledge bases for human microbiome-disease associations

scientific article published on 05 September 2019

Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

scientific article published on 31 August 2020

Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

scientific article published on 29 September 2020

Detection and correction of artefacts in estimation of rare copy number variants and analysis of rare deletions in type 1 diabetes

scientific article

Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis

scientific article published on 15 October 2018

Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults

scientific article published on 14 February 2020

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

scientific article published on 15 March 2021

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

scientific article published on 18 May 2020

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

scientific article published on 18 August 2020

Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity

scientific article published on 07 October 2020

Gut Microbiome in Schizophrenia: Altered Functional Pathways Related to Immune Modulation and Atherosclerotic Risk

scientific article published on 21 October 2020

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

scientific article published on 23 June 2020

High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

scientific article published on 11 February 2020

Impacts of the Human Gut Microbiome on Therapeutics.

scientific article published on 2 October 2017

Inhibition of DYRK1A and GSK3B induces human β-cell proliferation.

scientific article published on 26 October 2015

Mass spectrometry searches using MASST

scientific article published on 01 January 2020

Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs

scientific article published on 10 March 2020

Microbiome analyses of blood and tissues suggest cancer diagnostic approach

scientific article published on 11 March 2020

Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention

scientific article published in 2022

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

scientific article published on 04 April 2022

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Qiita: rapid, web-enabled microbiome meta-analysis

scientific article published on 01 October 2018

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection

scientific article published on 01 December 2020

Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data

scientific article published on 29 April 2021

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