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List of works by John M Eppley

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

scientific article published on 19 February 2020

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean.

scientific article published on 24 May 2019

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities ⬇️

scientific article published on March 22, 2011

Community-led, integrated, reproducible multi-omics with anvi'o

scientific article published on 01 January 2021

Complex marine microbial communities partition metabolism of scarce resources over the diel cycle

scientific article

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

scientific article

Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters

scientific article published on 24 September 2019

Diel cycling and long-term persistence of viruses in the ocean's euphotic zone.

scientific article published on 11 October 2017

Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean

scientific article published in 2022

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

scientific article published on 14 February 2020

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

scientific article

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

scientific article

Environmental drivers of a microbial genomic transition zone in the ocean's interior.

scientific article published on 14 August 2017

Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies

scientific article

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

scientific article

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

scientific article

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

scientific article published on 19 May 2015

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

scientific article published on 9 March 2015

Microbial dynamics of elevated carbon flux in the open ocean’s abyss

scientific article published in 2021

Nitrogen fixation in mesoscale eddies of the North Pacific Subtropical Gyre: Patterns and mechanisms

scientific article published in 2023

Novel Integrative Elements and Genomic Plasticity in Ocean Ecosystems

scientific article published on 08 April 2021

Novel integrative elements and genomic plasticity in ocean ecosystems

scientific article published on 28 December 2020

Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

scientific article

Pattern and synchrony of gene expression among sympatric marine microbial populations.

scientific article

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean

scientific article

Planktonic microbial signatures of sinking particle export in the open ocean’s interior

scientific article published on 7 November 2023

Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean

scientific article published on 19 September 2014

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

scientific article published on 8 December 2015

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