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List of works by Ying Yan

ADFinder: accurate detection of programmed DNA elimination using NGS high-throughput sequencing data

scientific article published on 04 April 2020

Characterization of Simple Sequence Repeats (SSRs) in Ciliated Protists Inferred by Comparative Genomics

scientific article published on 01 May 2020

Combined genome and transcriptome analyses of the ciliate Schmidingerella arcuata (Spirotrichea) reveal patterns of DNA elimination, scrambling, and inversion

scientific article published on 01 September 2020

Comparative Studies on the Polymorphism and Copy Number Variation of mtSSU rDNA in Ciliates (Protista, Ciliophora): Implications for Phylogenetic, Environmental, and Ecological Research

scientific article published on 25 February 2020

Corrigendum: Morphology and Molecular Phylogeny of Four Trachelocercid Ciliates (Protozoa, Ciliophora, Karyorelictea) Found in Marine Coastal Habitats of Northern China, With Description of a New Genus, Two New Species and a New Combination

scientific article published in 2021

DAPI staining and DNA content estimation of nuclei in uncultivable microbial eukaryotes (Arcellinida and Ciliates)

scholarly article published in 2021

Deciphering phylogenetic relationships in class Karyorelictea (Protista, Ciliophora) based on updated multi-gene information with establishment of a new order Wilbertomorphida n. ord.

scholarly article published in 2022

Further analyses of variation of ribosome DNA copy number and polymorphism in ciliates provide insights relevant to studies of both molecular ecology and phylogeny

scientific article published on 21 January 2019

Further analyses on the evolutionary “key‐protist” <i>Halteria</i> (Protista, Ciliophora) based on transcriptomic data

scientific article published in 2019

Insights into an Extensively Fragmented Eukaryotic Genome: De Novo Genome Sequencing of the Multinuclear Ciliate Uroleptopsis citrina.

scientific article

Molecular phylogeny and taxonomy of four Remanella species (Protozoa, Ciliophora): A flagship genus of karyorelictean ciliates, with descriptions of two new species

scientific article published in January 2022

Morphological, ontogenetic and molecular data support strongylidiids as being closely related to Dorsomarginalia (Protozoa, Ciliophora) and reactivation of the family Strongylidiidae Fauré-Fremiet, 1961

scientific article published in 2018

Morphology and Molecular Phylogeny of Four Trachelocercid Ciliates (Protozoa, Ciliophora, Karyorelictea) Found in Marine Coastal Habitats of Northern China, With Description of a New Genus, Two New Species and a New Combination

scientific article

Morphology and molecular phylogeny of three marine Condylostoma species from China, including two new ones (Ciliophora, Heterotrichea).

scientific article

Morphology and morphogenesis of a soil ciliate, Rigidohymena candens (Kahl, 1932) Berger, 2011 (Ciliophora, Hypotricha, Oxytrichidae), with notes on its molecular phylogeny based on small-subunit rDNA sequence data

scientific article

Morphology and phylogeny of three karyorelictean ciliates (Protista, Ciliophora), including two novel species, Trachelocerca chinensis sp. n. and Tracheloraphis dragescoi sp. n.

scientific article

Morphology and phylogeny of three trachelocercid ciliates, with description of a new species, Trachelocerca orientalis spec. nov. (Ciliophora, Karyorelictea).

scientific article

Morphology and phylogeny of three trachelocercids (Protozoa, Ciliophora, Karyorelictea), with description of two new species and insight into the evolution of the family Trachelocercidae

scientific article published on 20 May 2016

New contribution to the species-rich genus Euplotes: Morphology, ontogeny and systematic position of two species (Ciliophora; Euplotia).

scientific article published on 16 March 2018

Nuclear Features of the Heterotrich Ciliate Blepharisma americanum: Genomic Amplification, Life Cycle, and Nuclear Inclusion

scientific article

PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes

scientific article published on 01 August 2019

Phylogenomics of the epigenetic toolkit reveals punctate retention of genes across eukaryotes ⬇️

scientific article published on 13 October 2020

Redescriptions of three trachelocercid ciliates (Protista, Ciliophora, Karyorelictea), with notes on their phylogeny based on small subunit rRNA gene sequences

scientific article

Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates

scientific article published on 24 December 2019

Single-cell transcriptomic analysis reveals genome evolution in predatory litostomatean ciliates

scholarly article

Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates

scientific article published on 4 April 2023

Taxonomy and molecular phylogeny of four karyorelictid species belonging to the genera Apotrachelocerca and Tracheloraphis (Protozoa: Ciliophora), with descriptions of two new species ⬇️

scholarly article published in 2020

Taxonomy and phylogeny of three heterotrich ciliates (Protozoa, Ciliophora), with description of a newBlepharismaspecies

scientific article published on 20 May 2016

Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics.

scientific article published in August 2018

Unusual features of non-dividing somatic macronuclei in the ciliate class Karyorelictea

scientific article

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