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List of works by Amanda Birmingham

Artificial Selection: Finding Function amongst Randomized Sequences

article

BayesFold: rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences

scientific article

Context and the human microbiome

scientific article

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

scientific article

Efficient population-scale variant analysis and prioritization with VAPr

scientific article published on 01 August 2018

Inflammation-driven deaminase deregulation fuels human pre-leukemia stem cell evolution

scientific article published on 26 January 2021

Interactive network visualization in Jupyter notebooks: visJS2jupyter

scientific article published on 14 September 2017

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

scientific article

Normalization and microbial differential abundance strategies depend upon data characteristics

scientific article

PyCogent: a toolkit for making sense from sequence

scientific article published in January 2007

QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

scientific article published on 01 June 2020

Sharing and archiving nucleic acid structure mapping data

scientific article (publication date: July 2011)

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks

scientific article published on 25 July 2019

The RNA structure alignment ontology

scientific article published on 21 July 2009

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