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List of works by Jeremy Muhlich

A Quantitative Approach to Screen for Nephrotoxic Compounds In Vitro

scientific article published on 10 August 2015

A Simple Method for Creating a High‐Content Microscope for Imaging Multiplexed Tissue Microarrays

scientific article published on 06 April 2021

A Systems Toxicology Approach for the Prediction of Kidney Toxicity and Its Mechanisms In Vitro

scientific article published on 01 May 2019

Adaptive informatics for multifactorial and high-content biological data

scientific article

Analysis of growth factor signaling in genetically diverse breast cancer lines

scientific article

ChemBank: a small-molecule screening and cheminformatics resource database

scientific article

Flexible informatics for linking experimental data to mathematical models via DataRail

scientific article

From word models to executable models of signaling networks using automated assembly.

scientific article

Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling

scientific article

GRcalculator: an online tool for calculating and mining dose-response data.

scientific article published on 24 October 2017

Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer

scientific article published on 17 December 2019

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

scientific article

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

scientific article published on 25 November 2021

MITI minimum information guidelines for highly multiplexed tissue images

scientific article published on 01 March 2022

Mechanistic model of <scp>MAPK</scp> signaling reveals how allostery and rewiring contribute to drug resistance

scientific article published in 2023

Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS).

scientific article

Minerva: a light-weight, narrative image browser for multiplexed tissue images

scientific article published on 15 October 2020

Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data

scientific article published on 08 November 2021

Programming biological models in Python using PySB

scientific article

Properties of cell death models calibrated and compared using Bayesian approaches

scientific article published on January 2013

Receptor-Driven ERK Pulses Reconfigure MAPK Signaling and Enable Persistence of Drug-Adapted BRAF-Mutant Melanoma Cells

scientific article published on 21 October 2020

SYLARAS: A Platform for the Statistical Analysis and Visual Display of Systemic Immunoprofiling Data and Its Application to Glioblastoma

scientific article published on 03 September 2020

Scope2Screen: Focus+Context Techniques for Pathology Tumor Assessment in Multivariate Image Data

scientific article published on 24 December 2021

Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities

scientific article

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

scientific article published on 24 November 2017

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

scientific article published on 29 May 2020

shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data

scientific article published on 08 February 2021

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