List of works - Anthony S. Amend

A ridge-to-reef ecosystem microbial census reveals environmental reservoirs for animal and plant microbiomes

scientific article published in 2022

A unique signal distorts the perception of species richness and composition in high-throughput sequencing surveys of microbial communities: a case study of fungi in indoor dust

scientific article

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

scholarly article by Henrik Nilsson et al published November 2010 in Fungal Ecology

Coral-associated marine fungi form novel lineages and heterogeneous assemblages

scientific article published on 22 December 2011

Dining local: the microbial diet of a snail that grazes microbial communities is geographically structured

scientific article

Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter

scholarly article by Céline Mouginot et al published September 2014 in Soil Biology and Biochemistry

Foliar fungi alter reproductive timing and allocation in Arabidopsis under normal and water-stressed conditions: Raw Data and analysis code

Foliar microbiome transplants confer disease resistance in a critically-endangered plant.

scientific article published on 10 November 2017

Forest age correlates with fine-scale spatial structure of Matsutake mycorrhizas.

scientific article published on 22 January 2009

From dandruff to deep-sea vents: Malassezia-like fungi are ecologically hyper-diverse

scientific article

Fungal aerobiota are not affected by time nor environment over a 13-y time series at the Mauna Loa Observatory

scientific article published on 04 December 2019

Fungal communities living within leaves of native Hawaiian dicots are structured by landscape-scale variables as well as by host plants

scientific article published on 08 July 2020

Fungi associated with mesophotic macroalgae from the 'Au'au Channel, west Maui are differentiated by host and overlap terrestrial communities.

scientific article published on 11 July 2017

Fungi in the Marine Environment: Open Questions and Unsolved Problems

scientific article published on 05 March 2019

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

article

Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics.

scientific article

Macroecological patterns of marine bacteria on a global scale

article by Anthony S. Amend et al published 7 November 2012 in Journal of Biogeography

Marine fungi

scientific article published on 01 March 2019

Measuring carbon gains from fungal networks in understory plants from the tribe Pyroleae (Ericaceae): a field manipulation and stable isotope approach

scientific article

Microbial response to simulated global change is phylogenetically conserved and linked with functional potential

scientific article

Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities.

scientific article

Not just browsing: an animal that grazes phyllosphere microbes facilitates community heterogeneity.

scientific article

Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest

scientific article

Phytobiomes are compositionally nested from the ground up

scientific article published on 18 March 2019

Plant part and a steep environmental gradient predict plant microbial composition in a tropical watershed

scientific article published on 13 November 2020

Plant-microbe specificity varies as a function of elevation

scientific article published on 12 July 2019

Quantifying microbial communities with 454 pyrosequencing: does read abundance count? ⬇️

scientific article published on November 3, 2010

Scale-Dependent Influences of Distance and Vegetation on the Composition of Aboveground and Belowground Tropical Fungal Communities

scientific article published on 06 October 2020

Synergy among Microbiota and Their Hosts: Leveraging the Hawaiian Archipelago and Local Collaborative Networks To Address Pressing Questions in Microbiome Research

scientific article published on 13 March 2018

Targeted ITS1 sequencing unravels the mycodiversity of deep-sea sediments from the Gulf of Mexico

scientific article published on 05 August 2019

Temporal variation overshadows the response of leaf litter microbial communities to simulated global change

scientific article

Trends in yeast diversity discovery ⬇️

scholarly article published in 2021

Uncovering unseen fungal diversity from plant DNA banks

scientific article published on 28 August 2017

List of works by Anthony S. Amend

A ridge-to-reef ecosystem microbial census reveals environmental reservoirs for animal and plant microbiomes

A unique signal distorts the perception of species richness and composition in high-throughput sequencing surveys of microbial communities: a case study of fungi in indoor dust

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

Coral-associated marine fungi form novel lineages and heterogeneous assemblages

Dining local: the microbial diet of a snail that grazes microbial communities is geographically structured

Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter

Foliar fungi alter reproductive timing and allocation in Arabidopsis under normal and water-stressed conditions: Raw Data and analysis code

Foliar microbiome transplants confer disease resistance in a critically-endangered plant.

Forest age correlates with fine-scale spatial structure of Matsutake mycorrhizas.

From dandruff to deep-sea vents: Malassezia-like fungi are ecologically hyper-diverse

Fungal aerobiota are not affected by time nor environment over a 13-y time series at the Mauna Loa Observatory

Fungal communities living within leaves of native Hawaiian dicots are structured by landscape-scale variables as well as by host plants

Fungi associated with mesophotic macroalgae from the 'Au'au Channel, west Maui are differentiated by host and overlap terrestrial communities.

Fungi in the Marine Environment: Open Questions and Unsolved Problems

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics.

Macroecological patterns of marine bacteria on a global scale

Marine fungi

Measuring carbon gains from fungal networks in understory plants from the tribe Pyroleae (Ericaceae): a field manipulation and stable isotope approach

Microbial response to simulated global change is phylogenetically conserved and linked with functional potential

Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities.

Not just browsing: an animal that grazes phyllosphere microbes facilitates community heterogeneity.

Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest

Phytobiomes are compositionally nested from the ground up

Phytobiomes are compositionally nested from the ground up

Phytobiomes are compositionally nested from the ground up

Plant part and a steep environmental gradient predict plant microbial composition in a tropical watershed

Plant-microbe specificity varies as a function of elevation

Quantifying microbial communities with 454 pyrosequencing: does read abundance count? ⬇️

Scale-Dependent Influences of Distance and Vegetation on the Composition of Aboveground and Belowground Tropical Fungal Communities

Synergy among Microbiota and Their Hosts: Leveraging the Hawaiian Archipelago and Local Collaborative Networks To Address Pressing Questions in Microbiome Research

Targeted ITS1 sequencing unravels the mycodiversity of deep-sea sediments from the Gulf of Mexico

Temporal variation overshadows the response of leaf litter microbial communities to simulated global change

Trends in yeast diversity discovery ⬇️

Uncovering unseen fungal diversity from plant DNA banks