List of works by Sam Abbott

A cross-sectional analysis of meteorological factors and SARS-CoV-2 transmission in 409 cities across 26 countries

scientific article published on 13 October 2021

Adoption and impact of non-pharmaceutical interventions for COVID-19

scientific article published on 02 April 2020

Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England

scientific article published on 20 May 2020

Bounding the levels of transmissibility & immune evasion of the Omicron variant in South Africa

scientific article published on 21 December 2021

Commentary on the use of the reproduction number during the COVID-19 pandemic

scientific article published in September 2022

Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study

Contact tracing is an imperfect tool for controlling COVID-19 transmission and relies on population adherence

scientific article

Early analysis of the Australian COVID-19 epidemic

scientific article published on 30 April 2020

Early analysis of the Australian COVID-19 epidemic

scientific article published on 13 August 2020

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

scientific article published on 3 March 2021

Estimating number of cases and spread of Coronavirus disease 2019 (COVID-19) in the United Kingdom using critical care admissions, February to March 2020

scientific article published on 07 April 2020

Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020

scientific article published on 01 May 2020

Estimating the effect of the 2005 change in BCG policy in England: a retrospective cohort study, 2000 to 2015

scientific article published on 01 December 2019

Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship

scientific article (preprint)

Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020

scientific article published on 01 March 2020

Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China

scientific article published on 03 July 2020

Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts

Exploring the effects of BCG vaccination in patients diagnosed with tuberculosis: Observational study using the Enhanced Tuberculosis Surveillance system

scientific article published on 08 July 2019

Feasibility of controlling 2019-nCoV outbreaks by isolation of cases and contacts

scientific article published on 11 February 2020

Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts

scientific article published on 28 February 2020

Heavy-tailed sexual contact networks and monkeypox epidemiology in the global outbreak, 2022

scientific article published on 7 October 2022

Incarceration history and risk of HIV and hepatitis C virus acquisition among people who inject drugs: a systematic review and meta-analysis

scientific article published on 29 October 2018

Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2

scientific article published on 30 May 2023

Inferring the number of COVID-19 cases from recently reported deaths

scientific article (preprint)

Inferring the number of COVID-19 cases from recently reported deaths

scientific article published on 27 April 2020

Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study

scientific article published on 2 March 2022

Practical considerations for measuring the effective reproductive number, Rt

scientific article published on 20 June 2020

Practical considerations for measuring the effective reproductive number, Rt

scientific article published on 10 December 2020

Reassessing the evidence for universal school-age BCG vaccination in England and Wales: re-evaluating and updating a modelling study

scientific article published on 11 January 2022

Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections

scientific article published on 22 October 2020

The association of COVID-19 incidence with temperature, humidity, and UV radiation – A global multi-city analysis

scientific article published in January 2023

The potential health and economic value of SARS-CoV-2 vaccination alongside physical distancing in the UK: a transmission model-based future scenario analysis and economic evaluation

scientific article published in March 2021

The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan: Exploring initial point-source exposure sizes and durations using scenario analysis

scientific article published on 03 February 2020

Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis

scientific article published on 01 January 2022

covidregionaldata: Subnational data for COVID-19 epidemiology

scientific article published on 05 July 2021

getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data

scientific article published on 26 February 2019

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