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List of works by Caroline Buckee

A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion

scientific article (publication date: 13 August 2014)

A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices

scientific article published on 09 October 2020

A network approach to analyzing highly recombinant malaria parasite genes

scientific article

A nowcasting framework for correcting for reporting delays in malaria surveillance

scientific article published on 16 November 2021

A sticky situation: the unexpected stability of malaria elimination

scientific article published on 24 June 2013

A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010

scientific article published on 13 February 2013

Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains ⬇️

scientific article published on 21 April 2020

Aggregated mobility data could help fight COVID-19

scientific article published on 23 March 2020

Altered drug susceptibility during host adaptation of a Plasmodium falciparum strain in a non-human primate model

scientific article published on 16 February 2016

An approach to classifying sequence tags sampled from Plasmodium falciparum var genes

scientific article published on 25 March 2007

Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern

scientific article

Ape parasite origins of human malaria virulence genes

scientific article

COVID-19 Futures: A Framework for Exploring Medium and Long-Term Impacts

scientific article published on 3 September 2020

Commentary: containing the ebola outbreak - the potential and challenge of mobile network data

scientific article

Comparing nonpharmaceutical interventions for containing emerging epidemics

scientific article

Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data

scientific article

Containing Emerging Epidemics: a Quantitative Comparison of Quarantine and Symptom Monitoring

scientific article published on 02 September 2016

Contrasting population structures of the genes encoding ten leading vaccine-candidate antigens of the human malaria parasite, Plasmodium falciparum

scientific article

Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires

scientific article published on 09 October 2014

Correction to: Mapping malaria by combining parasite genomic and epidemiologic data

scholarly article by Amy Wesolowski et al published 28 December 2018 in BMC Medicine

Decomposition of the US black/white inequality in premature mortality, 2010-2015: an observational study

scientific article published on 19 November 2019

Deconstructing the parasite multiplication rate of Plasmodium falciparum

scientific article published in 2021

Digital epidemiology

scientific article

Disrupting Mosquito Reproduction and Parasite Development for Malaria Control

scientific article

Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics

scientific article

Epigenetic dysregulation of virulence gene expression in severe Plasmodium falciparum malaria

scientific article

Estimating Relatedness Between Malaria Parasites

scientific article published on 17 June 2019

Estimating SARS-CoV-2 seroprevalence and epidemiological parameters with uncertainty from serological surveys

scientific article published on 20 April 2020

Estimating sources and sinks of malaria parasites in Madagascar

scientific article published in Nature Communications

Estimating the number of undetected COVID-19 cases exported internationally from all of China

scientific article (preprint)

Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa

scientific article

Every Body Counts: Measuring Mortality From the COVID-19 Pandemic

scientific article published on 11 September 2020

Evidence for widespread cryptic sexual generations in apparently purely asexual Andricus gallwasps

scientific article published on 12 December 2007

Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum

scientific article

Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans

scientific article published on January 2013

Exposing Anopheles mosquitoes to antimalarials blocks Plasmodium parasite transmission

scientific article published on 27 February 2019

Genome-wide association studies in Plasmodium species

scientific article

Heterogeneous mobile phone ownership and usage patterns in Kenya

scientific article

Host community structure and the maintenance of pathogen diversity.

scientific article published in July 2007

Human movement data for malaria control and elimination strategic planning

scientific article

Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions

scientific article published on 24 March 2020

Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead

scientific article published in August 2017

Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast

scientific article published on 16 November 2020

Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission

scientific article

Impact of human mobility on the emergence of dengue epidemics in Pakistan

scientific article

Improving epidemic surveillance and response: big data is dead, long live big data

scientific article published on 17 March 2020

Incubation periods impact the spatial predictability of cholera and Ebola outbreaks in Sierra Leone

scientific article published on 13 February 2020

Individual model forecasts can be misleading, but together they are useful

scientific article published on 11 August 2020

Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study

scientific article published on 20 May 2020

Inferring malaria parasite population structure from serological networks

scientific article

Introduction of rubella-containing-vaccine to Madagascar: implications for roll-out and local elimination

scientific article published on April 2016

Long-term evolution of antigen repertoires among carried meningococci

scientific article published on 3 February 2010

Longitudinal analysis of naturally acquired PfEMP1 CIDR domain variant antibodies identifies associations with malaria protection

scientific article published on 19 May 2020

Low-level malaria infections detected by a sensitive polymerase chain reaction assay and use of this technique in the evaluation of malaria vaccines in an endemic area

scientific article published on March 2007

Malaria eradication within a generation: ambitious, achievable, and necessary

scientific article published on 08 September 2019

Mapping imported malaria in Bangladesh using parasite genetic and human mobility data

article

Mapping malaria by combining parasite genomic and epidemiologic data

scholarly article by Amy Wesolowski et al published 18 October 2018 in BMC Medicine

Mapping the travel patterns of people with malaria in Bangladesh

scientific article published on 04 March 2020

Mathematical models for a new era of malaria eradication

scientific article

Measles outbreak risk in Pakistan: exploring the potential of combining vaccination coverage and incidence data with novel data-streams to strengthen control

article

Measuring mobility to monitor travel and physical distancing interventions: a common framework for mobile phone data analysis

scientific article published on 01 September 2020

Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010.

scientific article

Mobile phones and malaria: modeling human and parasite travel

scientific article published on January 2013

Modeling the Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19

scientific article (preprint)

Modeling the human infectious reservoir for malaria control: does heterogeneity matter?

scientific article published on 15 April 2013

Modeling the impact of human mobility and travel restrictions on the potential spread of SARS-CoV-2 in Taiwan

scientific article published on 11 April 2020

Modelling challenges in context: lessons from malaria, HIV, and tuberculosis

scientific article published on 16 February 2015

Modelling malaria population structure and its implications for control.

scientific article published on January 2010

Models of immune selection for multi-locus antigenic diversity of pathogens

scientific article published on 01 January 2019

Mortality in Puerto Rico after Hurricane Maria

Multilocus haplotypes reveal variable levels of diversity and population structure of Plasmodium falciparum in Papua New Guinea, a region of intense perennial transmission

scientific article

Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics

scientific article published on 12 December 2017

Multiple blood feeding in mosquitoes shortens the Plasmodium falciparum incubation period and increases malaria transmission potential

scientific article published on 31 December 2020

Nonannual seasonality of influenza-like illness in a tropical urban setting

scholarly article by Ha Minh Lam et al published November 2018 in Influenza and Other Respiratory Viruses

Opa protein repertoires of disease-causing and carried meningococci

scientific article published on 28 May 2008

Pathogen selection drives nonoverlapping associations between HLA loci

scientific article

Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda

scientific article published on 20 May 2016

Plasmodium falciparum antigenic variation. Mapping mosaic var gene sequences onto a network of shared, highly polymorphic sequence blocks

scientific article published on 21 April 2008

Plasmodium falciparum var gene expression homogeneity as a marker of the host-parasite relationship under different levels of naturally acquired immunity to malaria

scientific article

Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone: use of mobile phone data

article

Productive disruption: opportunities and challenges for innovation in infectious disease surveillance

scientific article published on 19 February 2018

Prolonging herd immunity to cholera via vaccination: Accounting for human mobility and waning vaccine effects.

scientific article published on 28 February 2018

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent.

scientific article published on 27 October 2017

Quantifying seasonal population fluxes driving rubella transmission dynamics using mobile phone data

scientific article

Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico

scientific article published on 08 December 2020

Quantifying the impact of accessibility on preventive healthcare in sub-Saharan Africa using mobile phone data

scientific article

Quantifying the impact of human mobility on malaria

scientific article published on October 2012

Quantifying the success of measles vaccination campaigns in the Rohingya refugee camps

scientific article published on 09 January 2020

Quantifying the success of measles vaccination campaigns in the Rohingya refugee camps

scientific article published on 05 October 2019

Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones

scientific article

Rapid Forecasting of Cholera Risk in Mozambique: Translational Challenges and Opportunities

scientific article published on 03 September 2019

Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake.

scientific article

Recasting the theory of mosquito-borne pathogen transmission dynamics and control

scientific article published on 03 March 2014

Recent advances in the molecular epidemiology of clinical malaria

article

Reductions in commuting mobility correlate with geographic differences in SARS-CoV-2 prevalence in New York City

scientific article published on 16 September 2020

Resistance to in sickle cell trait erythrocytes is driven by oxygen-dependent growth inhibition

article published in the Proceedings of the National Academy of Sciences of the United States of America

Resolving the cause of recurrent Plasmodium vivax malaria probabilistically

scientific article published on 06 December 2019

Risk factors and short-term projections for serotype-1 poliomyelitis incidence in Pakistan: A spatiotemporal analysis.

scientific article

Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis

scholarly article

Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations

scientific article

SARS-CoV-2 transmission dynamics should inform policy

scientific article published on 23 September 2020

Seasonal Population Movements and the Surveillance and Control of Infectious Diseases

scientific article

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13

scientific article

Society: Protect privacy of mobile data

scientific article published in October 2014

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

scientific article

Targeting Human Transmission Biology for Malaria Elimination

scientific article

The effect of immune selection on the structure of the meningococcal opa protein repertoire

scientific article

The effects of a partitioned var gene repertoire of Plasmodium falciparum on antigenic diversity and the acquisition of clinical immunity

scientific article published on 23 January 2008

The emergence and maintenance of sickle cell hotspots in the Mediterranean

scientific article

The evolution and maintenance of pathogen diversity

doctoral thesis by Caroline O'Flaherty Buckee

The impact of biases in mobile phone ownership on estimates of human mobility

scientific article published on 6 February 2013

The use of census migration data to approximate human movement patterns across temporal scales

scientific article (publication date: 2013)

The use of mobile phone data to inform analysis of COVID-19 pandemic epidemiology

scientific article published on 30 September 2020

Tube Well Use as Protection Against Rotavirus Infection During the Monsoons in an Urban Setting

scientific article published on 01 January 2020

U.S. county-level characteristics to inform equitable COVID-19 response

scientific article published on 11 April 2020

US-county level variation in intersecting individual, household and community characteristics relevant to COVID-19 and planning an equitable response: a cross-sectional analysis

scientific article published on 01 September 2020

Using Cell Phones to Fight Infectious Disease

scientific article published on 24 November 2016

Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases

scientific article published on 5 February 2020

Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae

scientific article published on 16 July 2015

Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite

scientific article published on 19 May 2016

Wolbachia infections in natural Anopheles populations affect egg laying and negatively correlate with Plasmodium development

scientific article

Wrong but Useful - What Covid-19 Epidemiologic Models Can and Cannot Tell Us

scientific article published on 15 May 2020

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