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List of works by Francesco Vezzi

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

scientific article

BESST--efficient scaffolding of large fragmented assemblies.

scientific article

CTNND2-a candidate gene for reading problems and mild intellectual disability

scientific article published on 3 December 2014

Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements

scientific article published on 08 February 2019

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

scientific article published on 09 October 2018

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping

scientific article published on 26 November 2015

De novoassembly of two Swedish genomes reveals missing segments from the human GRCh38 reference and improves variant calling of population-scale sequencing data

Development and performance of a next generation sequencing (NGS) assay for monitoring of mixed chimerism

scientific article published on 20 November 2020

ERNE-BS5

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

scientific article

Estimating the rate of index hopping on the Illumina HiSeq X platform

Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

scientific article

Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.

scientific article

Feature-by-Feature – Evaluating De Novo Sequence Assembly ⬇️

scientific article published on February 3, 2012

GAM-NGS: genomic assemblies merger for next generation sequencing

scientific article

GRM1 is upregulated through gene fusion and promoter swapping in chondromyxoid fibroma.

scientific article

GapFiller: a de novo assembly approach to fill the gap within paired reads

scientific article

Hierarchical Assembly of Pools

High-resolution detection of chromosomal rearrangements in leukemias through mate pair whole genome sequencing

scientific article published on 12 March 2018

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

scientific article published on 08 March 2019

Recommendations on e-infrastructures for next-generation sequencing

scientific article

Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons

scientific article

Replicative and non-replicative mechanisms in the formation of clustered CNVs are indicated by whole genome characterization

scientific article published on 12 November 2018

SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population.

scientific article

T-cell receptor-HLA-DRB1 associations suggest specific antigens in pulmonary sarcoidosis.

scientific article published on 19 November 2015

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data.

scientific article published on 10 May 2017

The Norway spruce genome sequence and conifer genome evolution

scientific article

Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women

scientific article

Whole-Genome Sequencing of Cytogenetically Balanced Chromosome Translocations Identifies Potentially Pathological Gene Disruptions and Highlights the Importance of Microhomology in the Mechanism of Formation

scientific article published on 16 November 2016

rNA: a fast and accurate short reads numerical aligner

scientific article published on 13 November 2011

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