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List of works by Mark Akeson

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

scientific article published on 18 June 2021

A preliminary length factor for erosion on steep slopes in Guatemala and its use to evaluate “curvas a nivel”

scholarly article

Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome

scientific article published on 01 January 2020

Author response to John Kasianowicz and Sergey Bezrukov

scientific article

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision ⬇️

scientific article published on February 14, 2012

Biosensors for DNA sequence detection

scientific article

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

scientific article published on 31 March 2020

Capture, Unfolding, and Detection of Individual tRNA Molecules Using a Nanopore Device

scientific article

Cheminformatics methods for novel nanopore analysis of HIV DNA termini

scientific article

Direct Observation of Translocation in Individual DNA Polymerase Complexes ⬇️

scientific article published on February 29, 2012

Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules.

scientific article

Discrimination among protein variants using an unfoldase-coupled nanopore.

scientific article published on 8 December 2014

Distinct Complexes of DNA Polymerase I (Klenow Fragment) for Base and Sugar Discrimination during Nucleotide Substrate Selection ⬇️

scientific article published on February 28, 2011

Dynamics of the Translocation Step Measured in Individual DNA Polymerase Complexes ⬇️

scientific article published on November 14, 2012

Electronic control of DNA polymerase binding and unbinding to single DNA molecules

scientific article published on April 2009

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

scientific article published on 13 December 2016

Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands

scientific article published on 28 October 2013

Evaluation of nanopores as candidates for electronic analyte detection

scientific article published in August 2002

Feedback control of a DNA molecule tethered in a nanopore to repeatedly probe DNA-binding enzymes

scientific article

Highly accurate classification of Watson-Crick basepairs on termini of single DNA molecules

scientific article

Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

scientific article published on 02 November 2021

Improved data analysis for the MinION nanopore sequencer

scientific article

Kinetic Mechanism of Translocation and dNTP Binding in Individual DNA Polymerase Complexes ⬇️

scientific article published on June 7, 2013

Linear assembly of a human centromere on the Y chromosome

scientific article published on 19 March 2018

Mapping DNA methylation with high-throughput nanopore sequencing

scientific article published on 20 February 2017

Mapping the position of DNA polymerase-bound DNA templates in a nanopore at 5 A resolution

scientific article published in June 2009

Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs

scientific article published on 01 April 2022

Nanopore cheminformatics

scientific article

Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells.

scientific article published on 19 July 2017

Nanopore native RNA sequencing of a human poly(A) transcriptome

scientific article published on 18 November 2019

Nanopore sensor for enzyme-mediated protein translocation

US patent 11339365

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

scientific article published on 04 May 2020

Nanopores discriminate among five C5-cytosine variants in DNA

scientific article

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing

scientific article published on 09 January 2020

Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase

scientific article

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

scientific article published on 16 May 2019

Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station Using Nanopore Sequencing

scientific article published on 16 January 2021

Replication of individual DNA molecules under electronic control using a protein nanopore ⬇️

scientific article published on September 26, 2010

Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore

scientific article published on 28 October 2007

Single-molecule analysis of DNA-protein complexes using nanopores

scientific article published on 4 March 2007

Specific nucleotide binding and rebinding to individual DNA polymerase complexes captured on a nanopore

scientific article published in March 2009

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

scientific article

Three decades of nanopore sequencing.

scientific article published in May 2016

Unfoldase-mediated protein translocation through an α-hemolysin nanopore

scientific article published on 03 February 2013

Unfolding and Translocation of Proteins Through an Alpha-Hemolysin Nanopore by ClpXP

scientific article published on 01 January 2021

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