List of works by Thomas E. Juenger

A generalist-specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range

scientific article published on 04 April 2022

A population genetic transect of Panicum hallii (Poaceae).

scientific article

Adaptations between ecotypes and along environmental gradients in Panicum virgatum

scientific article

Adaptive differentiation in floral traits in the presence of high gene flow in scarlet gilia (Ipomopsis aggregata).

scientific article

Arabidopsis ECERIFERUM9 involvement in cuticle formation and maintenance of plant water status

scientific article published on 25 May 2012

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

article

Climate and stomatal traits drive covariation in nighttime stomatal conductance and daytime gas exchange rates in a widespread C4 grass

scientific article published on 09 October 2020

Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C4 grass

scientific article published on 01 April 2019

Components of the ribosome biogenesis pathway underlie establishment of telomere length set point in Arabidopsis

scientific article published on 02 December 2019

Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species

scientific article published on 27 September 2019

Deeply diverged alleles in the Arabidopsis AREB1 transcription factor drive genome-wide differences in transcriptional response to the environment

scientific article

Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits

scientific article

Developmental profiles of neuroendocrine gene expression in the preoptic area of male rats

scientific article published on 15 January 2009

Direct and indirect selection on flowering time, water-use efficiency (WUE, δ (13)C), and WUE plasticity to drought in Arabidopsis thaliana

scientific article

Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.

scientific article

Drought, metabolites, and Arabidopsis natural variation: a promising combination for understanding adaptation to water-limited environments

scientific article published on 9 May 2011

Ecological interactions and the fitness effect of water-use efficiency: Competition and drought alter the impact of natural MPK12 alleles in Arabidopsis

scientific article published on 11 February 2016

Effects of perinatal polychlorinated biphenyls on adult female rat reproduction: development, reproductive physiology, and second generational effects

scientific article

Effects of two centuries of global environmental variation on phenology and physiology of Arabidopsis thaliana

scientific article published on 23 November 2019

Environmentally responsive QTL controlling surface wax load in switchgrass

scientific article published on 14 August 2020

Epistasis and genotype-environment interaction for quantitative trait loci affecting flowering time in Arabidopsis thaliana

scientific article published on February 2005

Evolution of a genetic incompatibility in the genus Xiphophorus.

scientific article published on 27 July 2013

Evolution of cold-tolerant fungal symbionts permits winter fungiculture by leafcutter ants at the northern frontier of a tropical ant-fungus symbiosis.

scientific article

Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana.

scientific article published on 14 April 2015

Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana.

scientific article published on 18 March 2010

Expression quantitative trait locus mapping across water availability environments reveals contrasting associations with genomic features in Arabidopsis.

scientific article published on 17 September 2013

Extensive cross-environment fitness variation lies along few axes of genetic variation in the model alga, Chlamydomonas reinhardtii.

scientific article published on 29 September 2014

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

scientific article published on 19 December 2017

Gamete fertility and ovule number variation in selfed reciprocal F1 hybrid triploid plants are heritable and display epigenetic parent-of-origin effects

scientific article (publication date: 31 January 2013)

Gene Expression analysis associated with salt stress in a reciprocally crossed rice population

scientific article published on 03 June 2019

Genetic Associations in Four Decades of Multi-environment Trials Reveal Agronomic Trait Evolution in Common Bean

scientific article published on 23 March 2020

Genetic mapping reveals an anthocyanin biosynthesis pathway gene potentially influencing evolutionary divergence between two subspecies of scarlet gilia (Ipomopsis aggregata).

scientific article published on 15 December 2017

Genetic variation in Arabidopsis thaliana for night-time leaf conductance

scientific article

Genetically correlated leaf tensile and morphological traits are driven by growing season length in a widespread perennial grass

scientific article published in 2024

Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, KAS-1 x TSU-1.

scientific article published on 12 September 2008

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

scientific article published on 15 July 2014

Genome-environment associations in sorghum landraces predict adaptive traits

scientific article

Genome-wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in Arabidopsis

scientific article published on 11 November 2013

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

scientific article published on 27 January 2021

Genomics of sorghum local adaptation to a parasitic plant

scientific article published on 11 February 2020

Genotypic variation in traits linked to climate and aboveground productivity in a widespread C₄ grass: evidence for a functional trait syndrome

scientific article

Geographic variation in hybridization across a reinforcement contact zone of chorus frogs (Pseudacris).

scientific article

Geographic variation in the genetic basis of resistance to leaf rust between locally adapted ecotypes of the biofuel crop switchgrass (Panicum virgatum)

scientific article published on 23 March 2020

Heritability and correlation structure of nectar and floral morphology traits in Nicotiana alata

scientific article published on 01 July 2008

Identification and characterization of nuclear microsatellite loci for multiple species of chorus frogs (Pseudacris) for population genetic analyses

In Arabidopsis thaliana codon volatility scores reflect GC3 composition rather than selective pressure ⬇️

scientific article

Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.).

scientific article

Interactive effects of water limitation and elevated temperature on the physiology, development and fitness of diverse accessions of Brachypodium distachyon

scientific article published on 16 November 2016

Intron-mediated alternative splicing of Arabidopsis P5CS1 and its association with natural variation in proline and climate adaptation

scientific article

Mapping of ionomic traits in Mimulus guttatus reveals Mo and Cd QTLs that colocalize with MOT1 homologues

scientific article

Mapping quantitative trait loci in multiple populations of Arabidopsis thaliana identifies natural allelic variation for trichome density.

scientific article

Microsatellite markers for the native Texas perennial grass, Panicum hallii (Poaceae).

scientific article published on 23 February 2012

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana

scientific article published on 20 July 2016

Natural Variation in 9-Cis-Epoxycartenoid Dioxygenase 3 and ABA Accumulation

scientific article published on 01 February 2019

Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression.

scientific article published on April 2006

Natural variation and genetic constraints on drought tolerance

scientific article published on 22 February 2013

Natural variation identifies genes affecting drought-induced abscisic acid accumulation in Arabidopsis thaliana

scientific article

Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana

scientific article

Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis

scientific article

PAIRWISE VERSUS DIFFUSE NATURAL SELECTION AND THE MULTIPLE HERBIVORES OF SCARLET GILIA, IPOMOPSIS AGGREGATA.

scientific article published on December 1998

PERMANENT GENETIC RESOURCES: Identification of nuclear microsatellite loci for Ipomopsis aggregata and the distribution of pairwise relatedness in a natural population

scientific article (publication date: March 2008)

Physiological genomics of response to soil drying in diverse Arabidopsis accessions

scientific article

Plant biomass, not plant economics traits, determines responses of soil CO 2 efflux to precipitation in the C 4 grass Panicum virgatum

scientific article published in 2020

Plant compartment and genetic variation drive microbiome composition in switchgrass roots

scientific article published on 31 January 2019

Plant physical defenses contribute to a latitudinal gradient in resistance to insect herbivory within a widespread perennial grass

scientific article published in 2024

Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation.

scientific article published on 22 May 2013

Pleiotropy, plasticity, and the evolution of plant abiotic stress tolerance

scientific article published on September 2010

Population differentiation in Daphnia alters community assembly in experimental ponds

scientific article

Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)

scientific article published on 01 November 2018

Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass

scientific article published on 31 May 2016

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient

scientific article published on 10 June 2019

Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits

scientific article published on 18 January 2023

Quantitative trait loci affecting delta13C and response to differential water availibility in Arabidopsis thaliana

scientific article published in January 2005

Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon

scientific article published on 24 March 2016

Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii

scientific article published on 3 February 2018

Quantitative trait loci mapping of floral and leaf morphology traits inArabidopsis thaliana: evidence for modular genetic architecture

article

Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice

scientific article published on 11 April 2017

Seed traits and recruitment interact with habitats to generate patterns of local adaptation in a perennial grass

scientific article published in 2024

Sensitivity Analysis of the APEX Model for Assessing Sustainability of Switchgrass Grown for Biofuel Production in Central Texas

Sex chromosome mosaicism and hybrid speciation among tiger swallowtail butterflies

scientific article

Spatial forecasting of switchgrass productivity under current and future climate change scenarios

scientific article

Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays

scientific article

Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids

scientific article (publication date: July 2016)

The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass

scientific article published in 2019

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)

scientific article (publication date: 9 September 2016)

The effects of prenatal PCBs on adult female paced mating reproductive behaviors in rats

scientific article published on 22 December 2006

The genetic basis for panicle trait variation in switchgrass (Panicum virgatum)

scientific article published in 2022

The genetic basis of the root economics spectrum in a perennial grass

scientific article published on 19 November 2021

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii

scientific article

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

scientific article published in Nature Communications

The physiological basis for genetic variation in water use efficiency and carbon isotope composition in Arabidopsis thaliana

scientific article published on 28 July 2013

Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research

scientific article

Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids

scientific article published on 21 March 2019

Variation in MPK12 affects water use efficiency in Arabidopsis and reveals a pleiotropic link between guard cell size and ABA response

scientific article published on 03 February 2014

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