List of works by Maximilian Haeussler

A cis-regulatory signature for chordate anterior neuroectodermal genes

scientific article

AMELIE speeds Mendelian diagnosis by matching patient phenotype and genotype to primary literature

scientific article published on 01 May 2020

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

scientific article

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

scientific article

Annotating genes and genomes with DNA sequences extracted from biomedical articles

scientific article

CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens.

scientific article published in July 2018

CRISPR off-targets: a question of context

scientific article published on 16 November 2019

Cell stress in cortical organoids impairs molecular subtype specification

scientific article published on 29 January 2020

Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

scientific article

Comparison of the expression of medaka (Oryzias latipes) pitx genes with other vertebrates shows high conservation and a case of functional shuffling in the pituitary.

scientific article published on 13 June 2007

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

scientific article published on November 2016

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

scientific article published in December 2017

Evaluation and rational design of guide RNAs for efficient CRISPR/Cas9-mediated mutagenesis in Ciona

scientific article

Evaluation and rational design of guide RNAs for efficient CRISPR/Cas9-mediated mutagenesis in Ciona

Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.

scientific article

Federated discovery and sharing of genomic data using Beacons

scientific article published on 01 March 2019

Genome Editing with CRISPR-Cas9: Can It Get Any Better?

scientific article

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis

article

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments.

scientific article published on 12 April 2018

Navigating protected genomics data with UCSC Genome Browser in a Box.

scientific article

Neuronal vulnerability and multilineage diversity in multiple sclerosis

scientific article published on 17 July 2019

ORegAnno: an open-access community-driven resource for regulatory annotation

scientific article

Publisher Correction: Federated discovery and sharing of genomic data using Beacons

scientific article published on 01 April 2019

Registered access: authorizing data access

scientific article published on 2 August 2018

Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5.

scientific article

Single-cell epigenomics reveals mechanisms of human cortical development

scientific article published on 06 October 2021

Single-cell genomics identifies cell type-specific molecular changes in autism

scientific article

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

scientific article

Text-mining assisted regulatory annotation

scientific article published on 13 February 2008

The GNAT library for local and remote gene mention normalization

scientific article

The UCSC Ebola Genome Portal

scientific article published on 7 November 2014

The UCSC Genome Browser database: 2014 update

scientific article

The UCSC Genome Browser database: 2015 update

scientific article

The UCSC Genome Browser database: 2016 update

scientific article

The UCSC Genome Browser database: 2017 update

scientific article

The UCSC Genome Browser database: 2018 update

scientific article published on 2 November 2017

The UCSC Genome Browser database: 2019 update

scientific article published on 01 January 2019

The UCSC Genome Browser database: 2021 update

scientific article published on 22 November 2020

The UCSC Genome Browser database: extensions and updates 2013.

scientific article

The UCSC SARS-CoV-2 Genome Browser

scientific article published on 05 May 2020

The UCSC SARS-CoV-2 Genome Browser

scientific article published on 09 September 2020

The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families

scientific article published on 31 March 2020

UCSC Cell Browser: visualize your single-cell data

scientific article

UCSC Genome Browser enters 20th year

scientific article published on 01 January 2020

User-friendly, scalable tools and workflows for single-cell RNA-seq analysis

scientific article

When needles look like hay: how to find tissue-specific enhancers in model organism genomes

scientific article published on 03 December 2010

pubmed2ensembl: a resource for mining the biological literature on genes

scientific article

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