Search filters

List of works by Orr Ashenberg

A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade

article

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

scientific article published on 23 May 2019

A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq

scientific article published on 25 July 2020

A simple physical model for scaling in protein-protein interaction networks

scientific article

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

scientific article published on 11 May 2020

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

article published in 2021

A single-cell landscape of high-grade serous ovarian cancer

scientific article published on 22 June 2020

Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

scientific article published on 25 June 2020

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

scientific article published on 27 July 2020

Decoding human fetal liver haematopoiesis

scientific article published on 09 October 2019

Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA

scientific article

Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones

scientific article published on 17 September 2018

Determinants of homodimerization specificity in histidine kinases.

scientific article published on 10 August 2011

Emergence of a High-Plasticity Cell State during Lung Cancer Evolution

scientific article published on 08 July 2020

Helix bundle loops determine whether histidine kinases autophosphorylate in cis or in trans.

scientific article published on 16 January 2013

Identifying and reducing error in cluster-expansion approximations of protein energies

scientific article

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

scientific article published on 21 April 2020

Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

scientific article published on 13 April 2020

Mutational effects on stability are largely conserved during protein evolution

scientific article published on 09 December 2013

Networks of bZIP Protein-Protein Interactions Diversified Over a Billion Years of Evolution ⬇️

scientific article published on May 10, 2013

Quantifying fitness distributions and phenotypic relationships in recombinant yeast populations

scholarly article

Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity

scientific article published on 05 September 2018

Rewiring the specificity of two-component signal transduction systems

scientific article published on June 2008

Robust protein protein interactions in crowded cellular environments

scholarly article

Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors ⬇️

journal article from 'bioRxiv' published in 2020

Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma

scientific article published on 01 July 2020

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

scholarly article by Christoph Muus published in March 2021

Site-Specific Amino Acid Preferences Are Mostly Conserved in Two Closely Related Protein Homologs

scientific article

Spatial tethering of kinases to their substrates relaxes evolutionary constraints on specificity

scientific article published on 5 November 2012

Systematic dissection and trajectory-scanning mutagenesis of the molecular interface that ensures specificity of two-component signaling pathways

scientific article

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation

scientific article published on 01 November 2018

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

scientific article published on 01 April 2020

Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses

scientific article published on 01 October 2019

Using analyses of amino Acid coevolution to understand protein structure and function

scientific article

Paulina is supported by:

About Paulina

Help