List of works - Carolyn J Hogg

A case for genetic parentage assignment in captive group housing

scientific article published on 4 June 2019

A demonstration of conservation genomics for threatened species management

scientific article published on 19 June 2020

A meta-analysis of birth-origin effects on reproduction in diverse captive environments.

scientific article

Adaptation and conservation insights from the koala genome

scientific article published on 02 July 2018

Addressing Threats and Ecosystem Intactness to Enable Action for Extinct in the Wild Species

scientific article published in 2023

Assessing evolutionary processes over time in a conservation breeding program: a combined approach using molecular data, simulations and pedigree analysis

scientific article published in 2021

Characterisation of reproductive gene diversity in the endangered Tasmanian devil

scientific article published on 14 November 2020

Characterisation of the faecal virome of captive and wild Tasmanian devils using virus-like particles metagenomics and meta-transcriptomics

scientific article published on 15 October 2018

Complex problems need detailed solutions: Harnessing multiple data types to inform genetic management in the wild

scientific article published on 26 December 2018

DNA metabarcoding reveals a broad dietary range for Tasmanian devils introduced to a naive ecosystem

scientific article published on 19 May 2022

Deciphering genetic mate choice: Not so simple in group-housed conservation breeding programs

scientific article published on 19 May 2020

Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population.

scientific article published on 14 October 2015

Devil women

scientific article published in 2018

Disentangling the mechanisms of mate choice in a captive koala population

scientific article published on 21 August 2018

Extinct in the wild: The precarious state of Earth’s most threatened group of species

scientific article published on 01 March 2023

Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics

scientific article published on 15 May 2019

First evidence of deviation from Mendelian proportions in a conservation programme

scientific article published on 19 June 2021

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species.

scientific article

Future‐proofing the koala: Synergising genomic and environmental data for effective species management

scientific article published on 28 March 2022

Genetic impacts of conservation management actions in a critically endangered parrot species

scientific article published on 15 July 2020

Genomics for conservation: a case study of behavioral genes in the Tasmanian devil

scientific article published on 26 March 2021

How much is enough? Sampling intensity influences estimates of reproductive variance in an introduced population

scientific article published on 4 November 2021

Identifying cost‐effective recovery actions for a critically endangered species

scientific article published on 19 November 2021

Impact of reduced-representation sequencing protocols on detecting population structure in a threatened marsupial

scientific article published on 09 July 2019

Impacts of early viability selection on management of inbreeding and genetic diversity in conservation

scientific article published on 2 April 2015

Improved high-throughput MHC typing for non-model species using long-read sequencing

scientific article published in April 2022

Increasing generations in captivity is associated with increased vulnerability of Tasmanian devils to vehicle strike following release to the wild

scientific article published on 19 May 2017

Investigating inbreeding in a free-ranging, captive population of an Australian marsupial

scientific article published on 12 May 2020

Koala Genome Survey: An Open Data Resource to Improve Conservation Planning

scientific article published in 2023

Lack of genetic diversity across diverse immune genes in an endangered mammal, the Tasmanian devil (Sarcophilus harrisii).

scientific article published on 17 July 2015

Low innate immune-gene diversity in the critically endangered orange-bellied parrot ( Neophema chrysogaster )

scientific article published on 20 November 2019

MHC-associated mate choice under competitive conditions in captive versus wild Tasmanian devils

scientific article published on 13 June 2019

No evidence of inbreeding depression in a Tasmanian devil insurance population despite significant variation in inbreeding.

scientific article

Offspring survival changes over generations of captive breeding

scientific article published on 24 May 2021

Pedigree analysis reveals a generational decline in reproductive success of captive Tasmanian devil (Sarcophilus harrisii): implications for captive management of threatened species.

scientific article published on 4 April 2017

Pedigree reconstruction using molecular data reveals an early warning sign of gene diversity loss in an island population of Tasmanian devils (Sarcophilus harrisii)

scientific article published on 27 September 2017

Response to Britt et al. 2018 “The importance of non-academic co-authors in bridging the conservation genetics gap” Biological Conservation 218, 118–123

scientific article published in June 2018

Species Management Benchmarking: Outcomes Over Outputs in a Changing Operating Environment ⬇️

scientific article published on August 13, 2012

The effects of group versus intensive housing on the retention of genetic diversity in insurance populations

scientific article published in February 2018

The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies

scientific article published on 08 November 2020

Threatened Species Initiative: Empowering conservation action using genomic resources

scientific article published on 18 January 2022

Too much of a good thing? Finding the most informative genetic dataset to answer conservation questions

scientific article published on 01 May 2019

Using phylogenetics to explore interspecies genetic rescue options for a critically endangered parrot

scientific article published in 2021

“Devil Tools & Tech”: A Synergy of Conservation Research and Management Practice

scientific article published on 09 December 2015

List of works by Carolyn J Hogg

A case for genetic parentage assignment in captive group housing

A demonstration of conservation genomics for threatened species management

A meta-analysis of birth-origin effects on reproduction in diverse captive environments.

Adaptation and conservation insights from the koala genome

Addressing Threats and Ecosystem Intactness to Enable Action for Extinct in the Wild Species

Assessing evolutionary processes over time in a conservation breeding program: a combined approach using molecular data, simulations and pedigree analysis

Characterisation of reproductive gene diversity in the endangered Tasmanian devil

Characterisation of the faecal virome of captive and wild Tasmanian devils using virus-like particles metagenomics and meta-transcriptomics

Complex problems need detailed solutions: Harnessing multiple data types to inform genetic management in the wild

DNA metabarcoding reveals a broad dietary range for Tasmanian devils introduced to a naive ecosystem

Deciphering genetic mate choice: Not so simple in group-housed conservation breeding programs

Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population.

Devil women

Disentangling the mechanisms of mate choice in a captive koala population

Extinct in the wild: The precarious state of Earth’s most threatened group of species

Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics

First evidence of deviation from Mendelian proportions in a conservation programme

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species.

Future‐proofing the koala: Synergising genomic and environmental data for effective species management

Genetic impacts of conservation management actions in a critically endangered parrot species

Genomics for conservation: a case study of behavioral genes in the Tasmanian devil

How much is enough? Sampling intensity influences estimates of reproductive variance in an introduced population

Identifying cost‐effective recovery actions for a critically endangered species

Impact of reduced-representation sequencing protocols on detecting population structure in a threatened marsupial

Impacts of early viability selection on management of inbreeding and genetic diversity in conservation

Improved high-throughput MHC typing for non-model species using long-read sequencing

Increasing generations in captivity is associated with increased vulnerability of Tasmanian devils to vehicle strike following release to the wild

Investigating inbreeding in a free-ranging, captive population of an Australian marsupial

Koala Genome Survey: An Open Data Resource to Improve Conservation Planning

Lack of genetic diversity across diverse immune genes in an endangered mammal, the Tasmanian devil (Sarcophilus harrisii).

Low innate immune-gene diversity in the critically endangered orange-bellied parrot ( Neophema chrysogaster )

MHC-associated mate choice under competitive conditions in captive versus wild Tasmanian devils

No evidence of inbreeding depression in a Tasmanian devil insurance population despite significant variation in inbreeding.

Offspring survival changes over generations of captive breeding

Pedigree analysis reveals a generational decline in reproductive success of captive Tasmanian devil (Sarcophilus harrisii): implications for captive management of threatened species.

Pedigree reconstruction using molecular data reveals an early warning sign of gene diversity loss in an island population of Tasmanian devils (Sarcophilus harrisii)

Response to Britt et al. 2018 “The importance of non-academic co-authors in bridging the conservation genetics gap” Biological Conservation 218, 118–123

Species Management Benchmarking: Outcomes Over Outputs in a Changing Operating Environment ⬇️

The effects of group versus intensive housing on the retention of genetic diversity in insurance populations

The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies

Threatened Species Initiative: Empowering conservation action using genomic resources

Too much of a good thing? Finding the most informative genetic dataset to answer conservation questions

Using phylogenetics to explore interspecies genetic rescue options for a critically endangered parrot

“Devil Tools & Tech”: A Synergy of Conservation Research and Management Practice