List of works - Luis E. Eguiarte

A genomic population genetics analysis of the pathogenic enterocyte effacement island in Escherichia coli: the search for the unit of selection

scientific article

An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert

scientific article

Ancestry and divergence of subtropical montane forest isolates: molecular biogeography of the genus Abies (Pinaceae) in southern México and Guatemala

scientific article published on 17 April 2008

Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network.

scientific article

Apparent similarity, underlying homoplasy: Morphology and molecular phylogeny of the North American clade of Manihot

scientific article

Aquatic bacterial assemblage structure in Pozas Azules, Cuatro Cienegas Basin, Mexico: Deterministic vs. stochastic processes

scientific article published in June 2015

Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico

scientific article

Bacterial communities and the nitrogen cycle in the gypsum soils of Cuatro Ciénegas Basin, coahuila: a Mars analogue.

scientific article

Beyond aridification: multiple explanations for the elevated diversification of cacti in the New World Succulent Biome

scientific article

Climate change is predicted to disrupt patterns of local adaptation in wild and cultivated maize

scientific article published on 10 July 2019

Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude

scientific article published on 20 December 2019

Comparative genomics of free-living Gammaproteobacteria: pathogenesis-related genes or interaction-related genes?

scientific article

Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin I: ancient lessons on how to cope with an environment under severe nutrient stress

scientific article (publication date: July 2012)

Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin II: community structure and composition in oligotrophic environments

scientific article (publication date: July 2012)

Demographic modelling helps track the rapid and recent divergence of a conifer species pair from Central Mexico

scientific article published in 2022

Difference in Germination Traits between Congeneric Native and Exotic Species May Affect Invasion

scientific article published in 2024

Divergence and Phylogeny of Firmicutes from the Cuatro Ciénegas Basin, Mexico: A Window to an Ancient Ocean ⬇️

scientific article (publication date: July 2012)

Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana)

scientific article published on 07 June 2019

Diversification in species complexes: tests of species origin and delimitation in the Bursera simaruba clade of tropical trees (Burseraceae).

scientific article

Diversity across Seasons of Culturable Pseudomonas from a Desiccation Lagoon in Cuatro Cienegas, Mexico

scientific article

Diversity of aquatic prokaryotic communities in the Cuatro Cienegas basin

scientific article published on 8 May 2008

Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México

scientific article

Drastic changes in aquatic bacterial populations from the Cuatro Cienegas Basin (Mexico) in response to long-term environmental stress

scientific article

Effect of variation in self-incompatibility on pollen limitation and inbreeding depression in Flourensia cernua (Asteraceae) scrubs of contrasting density

scientific article published on 14 February 2009

Effective population size, genetic variation, and their relevance for conservation: the bighorn sheep in Tiburon Island and comparisons with managed artiodactyls

scientific article (publication date: 2013)

Enrichment experiment changes microbial interactions in an ultra-oligotrophic environment

scientific article

Evaluation of the Impact of Genetically Modified Cotton After 20 Years of Cultivation in Mexico.

scientific article published on 22 June 2018

Evaluation of the Minimum Sampling Design for Population Genomic and Microsatellite Studies: An Analysis Based on Wild Maize

scientific article published on 18 September 2020

Evidence of biogeography in surface ocean bacterioplankton assemblages

scientific article published on June 2008

Evolution of an ancient microsatellite hotspot in the conifer mitochondrial genome and comparison with other plants

scientific article published in March 2013

Evolutionary Dynamics of Transferred Sequences Between Organellar Genomes in Cucurbita

scientific article published on 07 November 2019

Evolutionary ecology of Agave : distribution patterns, phylogeny, and coevolution (an homage to Howard S. Gentry)

scientific article

Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes

article

Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria

scientific article published on 10 September 2020

Experimental Analysis of Interactions Among Saprotrophic Fungi from A Phosphorous-Poor Desert Oasis in the Chihuahuan Desert

scientific article published on 13 July 2020

Experimental and molecular approximation to microbial niche: trophic interactions between oribatid mites and microfungi in an oligotrophic freshwater system.

scientific article published on 11 July 2018

Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis).

scientific article

From Isozymes to Genomics: Population Genetics and Conservation of Agave in México

article

Genetic Diversity and Distribution of Blastocystis Subtype 3 in Human Populations, with Special Reference to a Rural Population in Central Mexico.

scientific article published on 18 March 2018

Genetic Resources in the "Calabaza Pipiana" Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models.

scientific article published on 29 March 2018

Genetic Variation and Structure in Contrasting Geographic Distributions: Widespread Versus Restricted Black-Tailed Prairie Dogs (Subgenus Cynomys).

scientific article published on January 2015

Genetic diversity, gene flow, and differentiation among wild, semiwild, and landrace chile pepper (Capsicum annuum) populations in Oaxaca, Mexico

scientific article published in 2022

Genetic structure and indirect estimates of gene flow in three taxa of Cucurbita (Cucurbitaceae) in western Mexico

scientific article published on 01 July 2002

Genetic variation, genetic structure and effective population size in the tropical holoparasitic endophyteBdallophyton bambusarum (Rafflesiaceae)

scientific article published in 1998

Genome size variation in wild and cultivated maize along altitudinal gradients.

scientific article

Genomic Analyses of Wild and Cultivated Bacanora Agave (Agave angustifolia var. pacifica) Reveal Inbreeding, Few Signs of Cultivation History and Shallow Population Structure

scientific article published on 27 May 2022

Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment

scientific article published on 28 January 2020

Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats

scientific article published on 01 June 2020

Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination.

scientific article published on 17 October 2011

Genomic variation in recently collected maize landraces from Mexico

scientific article published on 7 November 2015

Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners

scientific article published on 15 July 2020

Gypsum soil restriction drives genetic differentiation in Fouquieria shrevei (Fouquieriaceae).

scientific article

Hierarchical clustering of genetic diversity associated to different levels of mutation and recombination in Escherichia coli: a study based on Mexican isolates.

scientific article published on 18 September 2012

High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis

scientific article

Historical biogeography and phylogeny of Cucurbita: Insights from ancestral area reconstruction and niche evolution

scientific article published on 21 July 2018

Historical, temporal, and geographic dynamism of the interaction between Agave and Leptonycteris nectar‐feeding bats

scientific article published in 2023

Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight

scientific article

Insights into the historical construction of species-rich Mesoamerican seasonally dry tropical forests: the diversification of Bursera (Burseraceae, Sapindales).

scientific article

Local genetic differentiation among populations of the mass-flowering tropical shrub Erythroxylum havanense (Erythroxylaceae).

scientific article

MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle

scientific article published on 23 October 2017

Mesocosms of Aquatic Bacterial Communities from the Cuatro Cienegas Basin (Mexico): A Tool to Test Bacterial Community Response to Environmental Stress ⬇️

scientific article published on March 30, 2012

Microbial endemism: does phosphorus limitation enhance speciation?

scientific article published in 2008

Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico

scientific article

Microbial stowaways: inimitable survivors or hopeless pioneers?

scientific article published on July 2012

Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico

scientific article

Multivariate and phylogenetic analyses assessing the response of bacterial mat communities from an ancient oligotrophic aquatic ecosystem to different scenarios of long-term environmental disturbance

scientific article

Neotropical mutualism between Acacia and Pseudomyrmex: phylogeny and divergence times

scientific article published on 20 March 2010

Nutrient Dependent Cross-Kingdom Interactions: Fungi and Bacteria From an Oligotrophic Desert Oasis

scientific article published on 06 August 2018

Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond

scientific article published on 30 May 2017

Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments.

scientific article published on 3 March 2011

Peripatric speciation of an endemic species driven by Pleistocene climate change: The case of the Mexican prairie dog (Cynomys mexicanus).

scientific article

Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae).

scientific article

Phylogeny, Diversification Rate, and Divergence Time of Agave sensu lato (Asparagaceae), a Group of Recent Origin in the Process of Diversification

scientific article published on 09 November 2020

Phylogeny, diversification rates and species boundaries of Mesoamerican firs (Abies, Pinaceae) in a genus-wide context

scientific article published on 10 October 2011

Phylogeographic and population genetic analyses of Cucurbita moschata reveal divergence of two mitochondrial lineages linked to an elevational gradient

scientific article published on 18 February 2020

Phylogeography and Genetic Diversity in a Southern North American Desert: Agave kerchovei From the Tehuacán-Cuicatlán Valley, Mexico

scientific article published on 23 June 2020

Poinsettia's wild ancestor in the Mexican dry tropics: Historical, genetic, and environmental evidence.

scientific article

Population expansions shared among coexisting bacterial lineages are revealed by genetic evidence

scientific article published on 16 December 2014

Population genetic analysis and bioclimatic modeling in Agave striata in the Chihuahuan Desert indicate higher genetic variation and lower differentiation in drier and more variable environments.

scientific article published on June 2016

Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation

scientific article published on 22 June 2020

Quadrulella texcalense sp. nov. from a Mexican desert: An unexpected new environment for hyalospheniid testate amoebae.

scientific article

Rates of ecological divergence and body size evolution are correlated with species diversification in scaly tree ferns.

scientific article published in July 2016

Rates of molecular evolution in tree ferns are associated with body size, environmental temperature, and biological productivity

scientific article published on 25 April 2018

Recent radiation and dispersal of an ancient lineage: The case of Fouquieria (Fouquiericeae, Ericales) in North American deserts

scientific article published on 21 March 2018

Reproductive ecology of five sympatric Agave Littaea (Agavaceae) species in central Mexico

scientific article published in August 2005

Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: population genetics and biogeographic implications

scientific article

Round and large: morphological and genetic consequences of artificial selection on the gourd tree Crescentia cujete by the Maya of the Yucatan Peninsula, Mexico ⬇️

scientific article published on April 12, 2012

Temporal dynamics of areas of endemism under climate change: a case study of MexicanBursera(Burseraceae)

article published in 2013

The Cuatro Ciénegas Basin in Coahuila, Mexico: an astrobiological Precambrian Park

scientific article (publication date: July 2012)

The Evolutionary Ecology of Escherichia coli

scholarly article by Valeria Souza Saldivar et al published 2002 in American Scientist

The Genome of Cucurbita argyrosperma (Silver-Seed Gourd) Reveals Faster Rates of Protein-Coding Gene and Long Noncoding RNA Turnover and Neofunctionalization within Cucurbita

scientific article published on 08 January 2019

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

scientific article published in March 2007

The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment

scholarly article

The pollination biology of two paniculate agaves (Agavaceae) from northwestern Mexico: contrasting roles of bats as pollinators

scientific article

The relevance of gene flow with wild relatives in understanding the domestication process

scientific article published on 15 April 2020

The role of environment, local adaptation, and past climate fluctuation on the amount and distribution of genetic diversity in two subspecies of Mexican wild Zea mays

scientific article published on 17 November 2020

The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum ⬇️

scientific article (publication date: March 2013)

The shapes of gourds and tendrils: How the Cucurbitaceae diversity, molecular and morphological novelties evolved via whole-genome duplications

scientific article published on 01 July 2020

Theoretical analysis of the cost of antagonistic activity for aquatic bacteria in oligotrophic environments

scientific article published on 27 May 2015

Timing and rate of speciation in Agave (Agavaceae)

scientific article (publication date: 13 June 2006)

To converge or not to converge in environmental space: testing for similar environments between analogous succulent plants of North America and Africa

scientific article published on 9 April 2013

Tracing back the origin of pumpkins (Cucurbita pepo ssp. pepo L.) in Mexico

scientific article published on 14 August 2019

Travel, sex, and food: what's speciation got to do with it?

scientific article

Two-role model of an interaction network of free-living γ-proteobacteria from an oligotrophic environment

scientific article

Understanding microbial community diversity metrics derived from metagenomes: performance evaluation using simulated data sets

scientific article

Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach

scientific article published on 28 November 2018

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics

scientific article

Water-sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin.

scientific article

Revision of the genus Agrostis (Poaceae, Pooideae, Poeae) in Megamexico

scientific article published in 2023

List of works by Luis E. Eguiarte

A genomic population genetics analysis of the pathogenic enterocyte effacement island in Escherichia coli: the search for the unit of selection

An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert

Ancestry and divergence of subtropical montane forest isolates: molecular biogeography of the genus Abies (Pinaceae) in southern México and Guatemala

Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network.

Apparent similarity, underlying homoplasy: Morphology and molecular phylogeny of the North American clade of Manihot

Aquatic bacterial assemblage structure in Pozas Azules, Cuatro Cienegas Basin, Mexico: Deterministic vs. stochastic processes

Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico

Bacterial communities and the nitrogen cycle in the gypsum soils of Cuatro Ciénegas Basin, coahuila: a Mars analogue.

Beyond aridification: multiple explanations for the elevated diversification of cacti in the New World Succulent Biome

Climate change is predicted to disrupt patterns of local adaptation in wild and cultivated maize

Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude

Comparative genomics of free-living Gammaproteobacteria: pathogenesis-related genes or interaction-related genes?

Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin I: ancient lessons on how to cope with an environment under severe nutrient stress

Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin II: community structure and composition in oligotrophic environments

Demographic modelling helps track the rapid and recent divergence of a conifer species pair from Central Mexico

Difference in Germination Traits between Congeneric Native and Exotic Species May Affect Invasion

Divergence and Phylogeny of Firmicutes from the Cuatro Ciénegas Basin, Mexico: A Window to an Ancient Ocean ⬇️

Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana)

Diversification in species complexes: tests of species origin and delimitation in the Bursera simaruba clade of tropical trees (Burseraceae).

Diversity across Seasons of Culturable Pseudomonas from a Desiccation Lagoon in Cuatro Cienegas, Mexico

Diversity of aquatic prokaryotic communities in the Cuatro Cienegas basin

Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México

Drastic changes in aquatic bacterial populations from the Cuatro Cienegas Basin (Mexico) in response to long-term environmental stress

Effect of variation in self-incompatibility on pollen limitation and inbreeding depression in Flourensia cernua (Asteraceae) scrubs of contrasting density

Effective population size, genetic variation, and their relevance for conservation: the bighorn sheep in Tiburon Island and comparisons with managed artiodactyls

Enrichment experiment changes microbial interactions in an ultra-oligotrophic environment

Evaluation of the Impact of Genetically Modified Cotton After 20 Years of Cultivation in Mexico.

Evaluation of the Minimum Sampling Design for Population Genomic and Microsatellite Studies: An Analysis Based on Wild Maize

Evidence of biogeography in surface ocean bacterioplankton assemblages

Evolution of an ancient microsatellite hotspot in the conifer mitochondrial genome and comparison with other plants

Evolutionary Dynamics of Transferred Sequences Between Organellar Genomes in Cucurbita

Evolutionary ecology of Agave : distribution patterns, phylogeny, and coevolution (an homage to Howard S. Gentry)

Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes

Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria

Experimental Analysis of Interactions Among Saprotrophic Fungi from A Phosphorous-Poor Desert Oasis in the Chihuahuan Desert

Experimental and molecular approximation to microbial niche: trophic interactions between oribatid mites and microfungi in an oligotrophic freshwater system.

Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis).

From Isozymes to Genomics: Population Genetics and Conservation of Agave in México

Genetic Diversity and Distribution of Blastocystis Subtype 3 in Human Populations, with Special Reference to a Rural Population in Central Mexico.

Genetic Resources in the "Calabaza Pipiana" Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models.

Genetic Variation and Structure in Contrasting Geographic Distributions: Widespread Versus Restricted Black-Tailed Prairie Dogs (Subgenus Cynomys).

Genetic diversity, gene flow, and differentiation among wild, semiwild, and landrace chile pepper (<i>Capsicum annuum</i>) populations in Oaxaca, Mexico

Genetic structure and indirect estimates of gene flow in three taxa of Cucurbita (Cucurbitaceae) in western Mexico

Genetic variation, genetic structure and effective population size in the tropical holoparasitic endophyteBdallophyton bambusarum (Rafflesiaceae)

Genome size variation in wild and cultivated maize along altitudinal gradients.

Genomic Analyses of Wild and Cultivated Bacanora Agave (<i>Agave angustifolia</i> var. <i>pacifica</i>) Reveal Inbreeding, Few Signs of Cultivation History and Shallow Population Structure

Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment

Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats

Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination.

Genomic variation in recently collected maize landraces from Mexico

Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners

Gypsum soil restriction drives genetic differentiation in Fouquieria shrevei (Fouquieriaceae).

Hierarchical clustering of genetic diversity associated to different levels of mutation and recombination in Escherichia coli: a study based on Mexican isolates.

High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis

Historical biogeography and phylogeny of Cucurbita: Insights from ancestral area reconstruction and niche evolution

Historical, temporal, and geographic dynamism of the interaction between <i>Agave</i> and <i>Leptonycteris</i> nectar‐feeding bats

Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight

Insights into the historical construction of species-rich Mesoamerican seasonally dry tropical forests: the diversification of Bursera (Burseraceae, Sapindales).

Local genetic differentiation among populations of the mass-flowering tropical shrub Erythroxylum havanense (Erythroxylaceae).

MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle

Mesocosms of Aquatic Bacterial Communities from the Cuatro Cienegas Basin (Mexico): A Tool to Test Bacterial Community Response to Environmental Stress ⬇️

Microbial endemism: does phosphorus limitation enhance speciation?

Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico

Microbial stowaways: inimitable survivors or hopeless pioneers?

Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico

Multivariate and phylogenetic analyses assessing the response of bacterial mat communities from an ancient oligotrophic aquatic ecosystem to different scenarios of long-term environmental disturbance

Neotropical mutualism between Acacia and Pseudomyrmex: phylogeny and divergence times

Nutrient Dependent Cross-Kingdom Interactions: Fungi and Bacteria From an Oligotrophic Desert Oasis

Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond

Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments.

Peripatric speciation of an endemic species driven by Pleistocene climate change: The case of the Mexican prairie dog (Cynomys mexicanus).

Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae).

Phylogeny, Diversification Rate, and Divergence Time of Agave sensu lato (Asparagaceae), a Group of Recent Origin in the Process of Diversification

Phylogeny, diversification rates and species boundaries of Mesoamerican firs (Abies, Pinaceae) in a genus-wide context

Phylogeographic and population genetic analyses of Cucurbita moschata reveal divergence of two mitochondrial lineages linked to an elevational gradient

Phylogeography and Genetic Diversity in a Southern North American Desert: Agave kerchovei From the Tehuacán-Cuicatlán Valley, Mexico

Poinsettia's wild ancestor in the Mexican dry tropics: Historical, genetic, and environmental evidence.

Population expansions shared among coexisting bacterial lineages are revealed by genetic evidence

Population genetic analysis and bioclimatic modeling in Agave striata in the Chihuahuan Desert indicate higher genetic variation and lower differentiation in drier and more variable environments.

Revision of the genus Agrostis (Poaceae, Pooideae, Poeae) in Megamexico