List of works - Harukazu Suzuki

A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny

scientific article published on 16 November 2016

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

scientific article

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of active enhancers across human cell types and tissues

scientific article

An atlas of combinatorial transcriptional regulation in mouse and man

scientific article

An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

scientific article

Beyond the FANTOM4.

scientific article

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

scientific article

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

scientific article

Clusters of internally primed transcripts reveal novel long noncoding RNAs

scientific article published on 28 April 2006

Complex Loci in human and mouse genomes

scientific article

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

scientific article

Constructing ORFeome resources with removable termination codons

scientific article published on 01 July 2006

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

article

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

scientific article

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

scholarly article published in Nature Genetics

Corrigendum: Tiny RNAs associated with transcription start sites in animals

scholarly article published in Nature Genetics

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

scientific article

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

scientific article

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

scientific article

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

scientific article

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

scientific article

Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides

scientific article

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

scientific article

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

scientific article published on 19 April 2009

FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017

Functional annotation of human long noncoding RNAs via molecular phenotyping

scientific article published on 27 July 2020

Genome-wide analysis of mammalian promoter architecture and evolution

scientific article (publication date: June 2006)

Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.

scientific article

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action

scientific article

LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression

scientific article published on July 2006

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

scientific article

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

scientific article published on May 2009

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

scientific article published on 20 May 2009

Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes

scientific article

Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells

scientific article (publication date: 2011)

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

scientific article

Prevention of hepatocellular carcinoma by targeting MYCN-positive liver cancer stem cells with acyclic retinoid

scientific article published on 23 April 2018

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

scientific article

Recounting the FANTOM CAGEAssociated Transcriptome

scientific article published on 20 February 2020

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

scientific article

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

scientific article

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

scientific article published on 17 October 2009

Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly

scientific article published on 25 March 2009

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

scientific article published in March 2018

Single-Nucleotide Resolution Mapping of Hepatitis B Virus Promoters in Infected Human Livers and Hepatocellular Carcinoma

scientific article published on 28 September 2016

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

scientific article published on 12 November 2019

Solution structure of a BolA-like protein from Mus musculus

scientific article

Subcellular Localization of Mammalian Type II Membrane Proteins

scientific article published on 01 May 2006

Temporal dynamics and transcriptional control using single-cell gene expression analysis

scientific article

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

scientific article published on 19 April 2009

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

scientific article published on 22 June 2010

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations

scientific article published on 26 March 2014

The regulated retrotransposon transcriptome of mammalian cells

scientific article (publication date: May 2009)

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Tiny RNAs associated with transcription start sites in animals

scientific article published on 19 April 2009

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

Transcription and enhancer profiling in human monocyte subsets

scientific article published on 26 March 2014

Transcriptional features of genomic regulatory blocks

scientific article published on 19 April 2009

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

scientific article

Transcriptional network dynamics in macrophage activation

scientific article published on 12 May 2006

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

scientific article

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

scientific article published on 12 November 2010

List of works by Harukazu Suzuki

A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of active enhancers across human cell types and tissues

An atlas of combinatorial transcriptional regulation in mouse and man

An atlas of human long non-coding RNAs with accurate 5' ends.

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

Beyond the FANTOM4.

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

Clusters of internally primed transcripts reveal novel long noncoding RNAs

Complex Loci in human and mouse genomes

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

Constructing ORFeome resources with removable termination codons

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

Corrigendum: Tiny RNAs associated with transcription start sites in animals

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

FANTOM5 CAGE profiles of human and mouse samples

Functional annotation of human long noncoding RNAs via molecular phenotyping

Genome-wide analysis of mammalian promoter architecture and evolution

Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action

LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes

Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Prevention of hepatocellular carcinoma by targeting MYCN-positive liver cancer stem cells with acyclic retinoid

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

Recounting the FANTOM CAGEAssociated Transcriptome

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

Single-Nucleotide Resolution Mapping of Hepatitis B Virus Promoters in Infected Human Livers and Hepatocellular Carcinoma

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

Solution structure of a BolA-like protein from Mus musculus

Subcellular Localization of Mammalian Type II Membrane Proteins

Temporal dynamics and transcriptional control using single-cell gene expression analysis

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations

The regulated retrotransposon transcriptome of mammalian cells

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Tiny RNAs associated with transcription start sites in animals

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Transcription and enhancer profiling in human monocyte subsets

Transcriptional features of genomic regulatory blocks

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

Transcriptional network dynamics in macrophage activation

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation