Search filters

List of works by Daniel N Frank

A dysbiotic microbiome promotes head and neck squamous cell carcinoma

scientific article published in 2022

A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease

scientific article

Advanced Age Impairs Intestinal Antimicrobial Peptide Response and Worsens Fecal Microbiome Dysbiosis Following Burn Injury in Mice

scientific article published on 01 January 2020

Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes

scientific article published on 11 June 2015

Alterations in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome.

scientific article

Altered Interactions between the Gut Microbiome and Colonic Mucosa Precede Polyposis in APCMin/+ Mice

scientific article published on 29 June 2015

Altered tissue specialized pro-resolving mediators in chronic rhinosinusitis

scientific article published on 26 November 2020

Altered vaginal microbiota are associated with perinatal mother-to-child transmission of HIV in African women from Burkina Faso.

scientific article published in July 2012

Among older adults, age-related changes in the stool microbiome differ by HIV-1 serostatus

article

Author Correction: The gut microbiota in infants of obese mothers increases inflammation and susceptibility to NAFLD

scientific article published on 01 July 2019

Bile acid sequestration reverses liver injury and prevents progression of nonalcoholic steatohepatitis in Western diet-fed mice

scientific article published on 19 February 2020

Carbon dioxide and hydrogen sulfide associations with regional bacterial diversity patterns in microbially induced concrete corrosion

scientific article

Changes in Gut and Plasma Microbiome following Exercise Challenge in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS).

scientific article published on 18 December 2015

Cluster analysis of genome-wide expression differences in disease-unaffected ileal mucosa in inflammatory bowel diseases

Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling ⬇️

scientific article published on March 5, 2013

Comparison of Fecal Microbiota in Children with Autism Spectrum Disorders and Neurotypical Siblings in the Simons Simplex Collection

scientific article published on October 2015

Comparison of Whole-Genome Sequencing and Molecular-Epidemiological Techniques for Clostridium difficile Strain Typing

scientific article published on 23 April 2015

Correction: Evaluation of bloodstream infections, Clostridium difficile infections, and gut microbiota in pediatric oncology patients

scientific article

Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

scientific article published on 28 July 2015

Crohn's Disease Differentially Affects Region-Specific Composition and Aerotolerance Profiles of Mucosally Adherent Bacteria

scientific article published on 29 May 2020

Culture-independent analysis of aerosol microbiology in a metropolitan subway system

scientific article

Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota

scientific article published in October 2006

Culture-independent microbiological analysis of foley urinary catheter biofilms

scientific article

Culture-independent molecular analysis of microbial constituents of the healthy human outer ear.

scientific article

Determinants of the Nasal Microbiome: Pilot Study of Effects of Intranasal Medication Use

Different Gut Microbial Profiles in African and South Asian Women of Childbearing Age in the Women First (WF) Trial (FS07-05-19)

scientific article published on 13 June 2019

Different Gut Microbial Profiles in Sub-Saharan African and South Asian Women of Childbearing Age Are Primarily Associated With Dietary Intakes

scientific article published on 14 August 2019

Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases

scientific article

Early Microbes Modify Immune System Development and Metabolic Homeostasis-The "Restaurant" Hypothesis Revisited

scientific article published on 13 December 2017

Effect of Vitamin E With Therapeutic Iron Supplementation on Iron Repletion and Gut Microbiome in US Iron Deficient Infants and Toddlers

scientific article published on September 2016

Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers

scientific article published on 17 June 2015

Effects of different complementary feeding regimens on iron status and enteric microbiota in breastfed infants

scientific article published on 26 February 2013

Eucaryotic diversity in a hypersaline microbial mat.

scientific article

Evaluation of bacterial transmission to the paranasal sinuses through sinus irrigation

scientific article published on 17 March 2016

Evaluation of bloodstream infections, Clostridium difficile infections, and gut microbiota in pediatric oncology patients

scientific article published on 12 January 2018

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

scientific article

Expression of Bitter Taste Receptors and Solitary Chemosensory Cell Markers in the Human Sinonasal Cavity

scientific article published on 01 September 2019

Expression of immunoglobulin D is increased in chronic rhinosinusitis

scientific article published on October 2017

FUT2 Variants Confer Susceptibility to Familial Otitis Media

Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota

scientific article published on 20 July 2018

Gastrointestinal microbiology enters the metagenomics era.

scientific article

Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing

scientific article

Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.

scientific article

Gestational Diabetes Is Uniquely Associated With Altered Early Seeding of the Infant Gut Microbiota

scientific article published on 27 November 2020

Gut Microbiota Is Significantly Impacted by Feeding Mode and Associated With Growth Status in Exclusively Breastfed and Formula-Fed US Infants

scientific article published in 2022

High colonization rate and prolonged shedding of Clostridium difficile in pediatric oncology patients

scientific article published on 29 April 2014

High-resolution microbial community succession of microbially induced concrete corrosion in working sanitary manholes

scientific article published on 6 March 2015

Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition

scientific article

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

scientific article published on 30 June 2015

Identification of Novel Genes and Biological Pathways That Overlap in Infectious and Nonallergic Diseases of the Upper and Lower Airways Using Network Analyses

scientific article published on 01 January 2019

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts

scientific article

Impact of cigarette smoking on the middle meatus microbiome in health and chronic rhinosinusitis.

scientific article published on 14 August 2015

Implication of the intestinal microbiome as a potential surrogate marker of immune responsiveness to experimental therapies in autoimmune diabetes

scientific article

Induction of diabetes in the RIP-B7.1 mouse model is critically dependent on TLR3 and MyD88 pathways and is associated with alterations in the intestinal microbiome

scientific article published on 18 December 2013

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition

scientific article

Influence of Crohn's disease related polymorphisms in innate immune function on ileal microbiome

scientific article published on 28 February 2019

Initial investigation of small colony variants of Staphylococcus aureus in chronic rhinosinusitis

scientific article published on 01 January 2015

Inside Out: HIV, the Gut Microbiome, and the Mucosal Immune System.

scientific article published on January 2017

Intestinal lesions are associated with altered intestinal microbiome and are more frequent in children and young adults with cystic fibrosis and cirrhosis

scientific article published on 6 February 2015

Investigating the biological and clinical significance of human dysbioses ⬇️

scientific article published on July 19, 2011

Investigation of bacterial repopulation after sinus surgery and perioperative antibiotics.

scientific article published on 21 September 2015

Investigation of sinonasal microbiome spatial organization in chronic rhinosinusitis

scientific article published on 14 September 2016

Iron in Micronutrient Powder Promotes an Unfavorable Gut Microbiota in Kenyan Infants

scientific article

Lactation and neonatal nutrition: defining and refining the critical questions

scientific article published on June 2012

Lactobacillus rhamnosus GG bacteremia associated with probiotic use in a child with short gut syndrome

scientific article published on 01 March 2005

Longitudinal Reduction in Diversity of Maternal Gut Microbiota During Pregnancy Is Observed in Multiple Low-Resource Settings: Results From the Women First Trial

scientific article published in 2022

Longitudinal microbiome analysis of single donor fecal microbiota transplantation in patients with recurrent Clostridium difficile infection and/or ulcerative colitis.

scientific article published on 31 January 2018

MRSA colonization and the nasal microbiome in adults at high risk of colonization and infection.

scientific article published on 31 August 2015

Maternal treatment with short-chain fatty acids modulates the intestinal microbiota and immunity and ameliorates type 1 diabetes in the offspring

scientific article published on 8 September 2017

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases

scientific article

Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting

scientific article published on 9 December 2015

Microbial diversity in chronic open wounds

scientific article

Microbiological water quality monitoring in a resource-limited urban area: a study in Cameroon, Africa

scholarly article by Andrew W. Nelson et al published 22 October 2012 in Journal of public health in Africa

Microbiome complexity and Staphylococcus aureus in chronic rhinosinusitis.

scientific article

Microbiome in patients with upper airway disease: Moving from taxonomic findings to mechanisms and causality.

scientific article published on 24 May 2018

Microbiome manipulation modifies sex-specific risk for autoimmunity

scientific article

Mode of Delivery Determines Neonatal Pharyngeal Bacterial Composition and Early Intestinal Colonization

scientific article published on 28 March 2016

Modulation of inflammatory arthritis by gut microbiota through mucosal inflammation and autoantibody generation

scientific article published on 13 March 2018

Molecular analysis of single room humidifier bacteriology.

scientific article published on 26 November 2014

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

scientific article (publication date: 21 August 2007)

Muc5ac Expression Protects the Colonic Barrier in Experimental Colitis

scientific article published on 09 May 2020

Multi-omic studies on missense PLG variants in families with otitis media

scientific article published on 14 September 2020

Nutrimetabolomics reveals food-specific compounds in urine of adults consuming a DASH-style diet

scientific article published on 24 January 2020

Obese Adolescents With PCOS Have Altered Biodiversity and Relative Abundance in Gastrointestinal Microbiota

scientific article published on 01 June 2020

Of microbes and meals: the health consequences of dietary endotoxemia.

scientific article

Opportunistic pathogens enriched in showerhead biofilms

scientific article

Oral vitamin B12 supplement is delivered to the distal gut, altering the corrinoid profile and selectively depleting Bacteroides in C57BL/6 mice

scientific article published on 07 May 2019

Otitis media susceptibility and shifts in the head and neck microbiome due to SPINK5 variants

scientific article published on 24 July 2020

P-193 A Distinct Microbiome Signature Characterizes Patients with Penetrating and Fistulizing Crohnʼs Disease

Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine

scientific article published on 6 July 2015

Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine

scientific article published on 6 September 2017

Phylogenetic analysis of the structure of RNase MRP RNA in yeasts

scientific article

Preconception maternal nutrition: a multi-site randomized controlled trial

scientific article

Prevalence and abundance of Staphylococcus aureus in the middle meatus of patients with chronic rhinosinusitis, nasal polyps, and asthma

scientific article

Prevention of Virus-Induced Type 1 Diabetes with Antibiotic Therapy ⬇️

scientific article published on September 17, 2012

Probiotic supplements prevented oxonic acid-induced hyperuricemia and renal damage

scientific article published in PLoS ONE

Protein Intake During Early Complementary Feeding Affects the Gut Microbiota in U.S. Formula-fed Infants (FS04-03-19)

scientific article published on 13 June 2019

Pyrroloquinoline quinone prevents developmental programming of microbial dysbiosis and macrophage polarization to attenuate liver fibrosis in offspring of obese mice.

scientific article

Reply to M Gotteland and F Magne

scientific article published in January 2017

Response to Comment on Alkanani et al. Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes. Diabetes 2015;64:3510-3520.

scientific article published in October 2015

Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity.

scientific article

Sinus culture poorly predicts resident microbiota

scientific article published on 2 October 2014

Sinus microbiota varies among chronic rhinosinusitis phenotypes and predicts surgical outcome.

scientific article published on 26 March 2015

Specialized pro-resolving mediator lipidome and 16S rRNA bacterial microbiome data associated with human chronic rhinosinusitis

publication published on 01 April 2021

The Acute Influence of Acid Suppression with Esomeprazole on Gastrointestinal Microbiota and Brain Gene Expression Profiles in a Murine Model of Restraint Stress

scientific article published on 15 December 2018

The FUT2 Variant c.461G>A (p.Trp154*) Is Associated With Differentially Expressed Genes and Nasopharyngeal Microbiota Shifts in Patients With Otitis Media

scientific article published in 2022

The effect of PPI use on human gut microbiota and weight loss in patients undergoing laparoscopic Roux-en-Y gastric bypass.

scientific article

The gut microbiota in infants of obese mothers increases inflammation and susceptibility to NAFLD

scientific article published in Nature Communications

The human nasal microbiota and Staphylococcus aureus carriage

scientific article

The microbiome of the middle meatus in healthy adults

scientific article

The role of CDHR3 in susceptibility to otitis media

scientific article published in 2021

The role of the intestinal microbiota in type 1 diabetes.

scientific article published on 11 December 2012

The sinonasal bacterial microbiome in health and disease

scientific article

Update on bacterial detection methods in chronic rhinosinusitis: implications for clinicians and research scientists.

scientific article published on 06 June 2011

Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium avium complex organisms in tissue

scientific article

Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium tuberculosis in culture and tissue specimens

scientific article

tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R

scientific article published on 01 February 2021

Paulina is supported by:

About Paulina

Help