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List of works by Tomoo Shimada

A direction-selective local-thresholding method, DSLT, in combination with a dye-based method for automated three-dimensional segmentation of cells and airspaces in developing leaves

scientific article published in January 2015

A non-destructive screenable marker, OsFAST, for identifying transgenic rice seeds ⬇️

scientific article published on October 1, 2011

A novel role for oleosins in freezing tolerance of oilseeds in Arabidopsis thaliana

scientific article published on 14 May 2008

A rapid and non-destructive screenable marker, FAST, for identifying transformed seeds of Arabidopsis thaliana

scientific article published on 25 November 2009

A vacuolar sorting receptor PV72 on the membrane of vesicles that accumulate precursors of seed storage proteins (PAC vesicles).

scientific article

An ABC transporter B family protein, ABCB19, is required for cytoplasmic streaming and gravitropism of the inflorescence stems.

scientific article published on 4 September 2015

An ER-localized form of PV72, a seed-specific vacuolar sorting receptor, interferes the transport of an NPIR-containing proteinase in Arabidopsis leaves.

scientific article published in January 2004

An endoplasmic reticulum-derived structure that is induced under stress conditions in Arabidopsis

scientific article published in December 2002

Apple latent spherical virus (ALSV)-induced gene silencing in a medicinal plant, Lithospermum erythrorhizon

scientific article published on 11 August 2020

Arabidopsis ECHIDNA protein is involved in seed coloration, protein trafficking to vacuoles, and vacuolar biogenesis

scientific article published on 23 March 2020

Arabidopsis KAM2/GRV2 is required for proper endosome formation and functions in vacuolar sorting and determination of the embryo growth axis.

scientific article published on 26 January 2007

Arabidopsis Qa-SNARE SYP2 proteins localized to different subcellular regions function redundantly in vacuolar protein sorting and plant development ⬇️

scientific article published on November 24, 2010

Arabidopsis VPS35, a retromer component, is required for vacuolar protein sorting and involved in plant growth and leaf senescence

scientific article published on 25 January 2008

Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds.

scientific article published on 9 February 2007

AtVAM3 is required for normal specification of idioblasts, myrosin cells

scientific article published on 23 November 2005

AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins

scientific article published on 22 August 2006

BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis.

scientific article published on 15 December 2014

Biogenesis of leaf endoplasmic reticulum body is regulated by both jasmonate-dependent and independent pathways

scientific article published on 27 May 2019

C-terminal KDEL sequence of a KDEL-tailed cysteine proteinase (sulfhydryl-endopeptidase) is involved in formation of KDEL vesicle and in efficient vacuolar transport of sulfhydryl-endopeptidase

scientific article published in August 2003

CONTINUOUS VASCULAR RING (COV1) is a trans-Golgi network-localized membrane protein required for Golgi morphology and vacuolar protein sorting

scientific article published on 19 December 2013

CRISPR/Cas9-mediated targeted mutagenesis in the liverwort Marchantia polymorpha L.

scientific article published on 18 January 2014

Calcium-mediated association of a putative vacuolar sorting receptor PV72 with a propeptide of 2S albumin

scientific article published on 17 December 2001

Diversity and formation of endoplasmic reticulum-derived compartments in plants. Are these compartments specific to plant cells?

scientific article

Dynamic Capture and Release of Endoplasmic Reticulum Exit Sites by Golgi Stacks in Arabidopsis

scientific article published on 12 June 2020

Ectopic expression of an esterase, which is a candidate for the unidentified plant cutinase, causes cuticular defects in Arabidopsis thaliana

scientific article

Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha

scientific article published in PLoS ONE

Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis inMarchantia polymorpha

Endoplasmic Reticulum (ER) Membrane Proteins (LUNAPARKs) are Required for Proper Configuration of the Cortical ER Network in Plant Cells

article

Endoplasmic Reticulum (ER) Membrane Proteins (LUNAPARKs) are Required for Proper Configuration of the Cortical ER Network in Plant Cells

scientific article published on 01 October 2018

Endoplasmic reticulum-resident proteins are constitutively transported to vacuoles for degradation.

scientific article published in August 2004

Endosomal proteases facilitate the fusion of endosomes with vacuoles at the final step of the endocytotic pathway

scientific article published in March 2005

Enhancement of leaf photosynthetic capacity through increased stomatal density in Arabidopsis ⬇️

scientific article published on February 25, 2013

Evaluation of defective endosomal trafficking to the vacuole by monitoring seed storage proteins in Arabidopsis thaliana

scientific article published on 01 January 2014

FAMA is an essential component for the differentiation of two distinct cell types, myrosin cells and guard cells, in Arabidopsis

scientific article published on 10 October 2014

FAMA: A Molecular Link between Stomata and Myrosin Cells

scientific article

Fluorescent protein-based imaging and tissue-specific RNA-seq analysis of Arabidopsis hydathodes

scientific article published on 09 November 2020

GFS9/TT9 contributes to intracellular membrane trafficking and flavonoid accumulation in Arabidopsis thaliana.

scientific article

GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana

scientific article published on 20 November 2009

GREEN FLUORESCENT SEED, to Evaluate Vacuolar Trafficking in Arabidopsis Seeds

scientific article published on 01 January 2018

HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis

scientific article published on 11 November 2019

Higher Stomatal Density Improves Photosynthetic Induction and Biomass Production in Arabidopsis Under Fluctuating Light

scientific article published on 21 October 2020

Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development.

scientific article

Identification of Periplasmic Root-Cap Mucilage in Developing Columella Cells of Arabidopsis thaliana

scientific article published on 01 June 2019

Identification of an allele of VAM3/SYP22 that confers a semi-dwarf phenotype in Arabidopsis thaliana.

scientific article published on 4 June 2005

Involvement of Adapter Protein Complex 4 in Hypersensitive Cell Death Induced by Avirulent Bacteria.

scientific article

Isolation of Protein Storage Vacuoles and Their Membranes

scientific article published in January 2017

KATAMARI1/MURUS3 Is a novel golgi membrane protein that is required for endomembrane organization in Arabidopsis

scientific article published on 29 April 2005

Leaf Endoplasmic Reticulum Bodies Identified in Arabidopsis Rosette Leaves Are Involved in Defense against Herbivory

scientific article published on 29 January 2019

Leaf oil body functions as a subcellular factory for the production of a phytoalexin in Arabidopsis

scientific article

MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana

scientific article

MAG4/Atp115 is a golgi-localized tethering factor that mediates efficient anterograde transport in Arabidopsis.

scientific article published on 12 September 2010

MAIGO2 is involved in exit of seed storage proteins from the endoplasmic reticulum in Arabidopsis thaliana

scientific article published on 28 December 2006

MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis.

scientific article published on 26 November 2013

Myosin XI-Dependent Formation of Tubular Structures from Endoplasmic Reticulum Isolated from Tobacco Cultured BY-2 Cells ⬇️

scientific article published on March 22, 2011

Myosin-dependent endoplasmic reticulum motility and F-actin organization in plant cells.

scientific article

Myrosin cell development is regulated by endocytosis machinery and PIN1 polarity in leaf primordia of Arabidopsis thaliana

scientific article published on 26 November 2014

Myrosin cells are differentiated directly from ground meristem cells and are developmentally independent of the vasculature in Arabidopsis leaves

scientific article

Phosphorylation of the C Terminus of RHD3 Has a Critical Role in Homotypic ER Membrane Fusion in Arabidopsis

scientific article (publication date: February 2016)

Plant Vacuoles.

scientific article

Polar Localization of the Borate Exporter BOR1 Requires AP2-Dependent Endocytosis

scientific article published on 01 February 2019

Polar Localization of the NIP5;1 Boric Acid Channel Is Maintained by Endocytosis and Facilitates Boron Transport in Arabidopsis Roots.

scientific article published on 24 March 2017

Positive and negative peptide signals control stomatal density

scientific article published on 21 April 2011

Regulation of organ straightening and plant posture by an actin-myosin XI cytoskeleton

scientific article published on 23 March 2015

Spatiotemporal secretion of PEROXIDASE36 is required for seed coat mucilage extrusion in Arabidopsis.

scientific article published on 9 April 2013

Stomagen positively regulates stomatal density in Arabidopsis

scientific article published in Nature

Structural and functional relationships between plasmodesmata and plant endoplasmic reticulum-plasma membrane contact sites consisting of three synaptotagmins

scientific article published on 31 January 2020

Subcellular localisation of an endoplasmic reticulum-plasma membrane tethering factor, SYNAPTOTAGMIN 1, is affected by fluorescent protein fusion

scientific article published on 16 November 2018

Synaptotagmin-Associated Endoplasmic Reticulum-Plasma Membrane Contact Sites Are Localized to Immobile ER Tubules

scientific article published on 20 August 2018

The AP-1 Complex is Required for Proper Mucilage Formation in Arabidopsis Seeds

scientific article published on 01 November 2018

The AP-1 μ adaptin is required for KNOLLE localization at the cell plate to mediate cytokinesis in Arabidopsis.

scientific article published on 29 March 2013

The Adaptor Complex AP-4 Regulates Vacuolar Protein Sorting at the trans-Golgi Network by Interacting with VACUOLAR SORTING RECEPTOR1.

scientific article published on 6 November 2015

The ER body, a novel endoplasmic reticulum-derived structure in Arabidopsis.

scientific article

The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis

scientific article published on 13 May 2014

The chemical compound bubblin induces stomatal mispatterning in Arabidopsis by disrupting the intrinsic polarity of stomatal lineage cells

scientific article published on 13 January 2017

The plant endomembrane system--a complex network supporting plant development and physiology

scientific article published in April 2014

Vacuolar SNAREs function in the formation of the leaf vascular network by regulating auxin distribution

scientific article

Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana

scientific article

Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana

scientific article

Vacuolar transport in higher plants

scientific article published on 01 December 2008

Why green fluorescent fusion proteins have not been observed in the vacuoles of higher plants.

scientific article

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