Search filters

List of works by John M Archibald

A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup

article

A non-photosynthetic diatom reveals early steps of reductive evolution in plastids

scientific article

A spliceosomal intron of mitochondrial DNA origin

scientific article published on 01 November 2010

Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens

scientific article

Actin gene family dynamics in cryptomonads and red algae

scientific article

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

scientific article

Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages

scientific article

Being Aquifex aeolicus: Untangling a hyperthermophile's checkered past.

scientific article published on January 2013

Broad distribution of TPI-GAPDH fusion proteins among eukaryotes: evidence for glycolytic reactions in the mitochondrion?

scientific article

Cell Evolution: Gene Transfer Agents and the Origin of Mitochondria ⬇️

scientific article published on February 8, 2011

Chromosome-scale assemblies of <i>Acanthamoeba castellanii</i> genomes provide insights into <i>Legionella pneumophila</i> infection–related chromatin reorganization

scientific article published in 2022

Comment on "The evolution of modern eukaryotic phytoplankton".

scientific article published in December 2004

Comment on “Does constructive neutral evolution play an important role in the origin of cellular complexity?” DOI 10.1002/bies.201100010

article

Comparative Plastid Genomics of Cryptomonas Species Reveals Fine-Scale Genomic Responses to Loss of Photosynthesis

scientific article published on 01 February 2020

Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics

scientific article

Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set ⬇️

scientific article published on December 8, 2010

Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle

scientific article

Complete sequence and analysis of the mitochondrial genome of Hemiselmis andersenii CCMP644 (Cryptophyceae)

scientific article published in 2008

Complex array of endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands

scientific article

Complex protein targeting to dinoflagellate plastids

scientific article published in May 2005

Diversity and Evolution of Paramoeba spp. and their Kinetoplastid Endosymbionts

scientific article

Diversity, nomenclature, and taxonomy of protists

scientific article published in August 2007

Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes.

scientific article published on 20 May 2015

Evolution: Plumbing the Depths of Diplonemid Diversity

scientific article

Evolving a photosynthetic organelle

scientific article

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

scientific article published on 11 September 2017

Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies

scientific article

Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.

scientific article

Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals

scientific article published on 01 August 2002

Gene duplication and gene conversion shape the evolution of archaeal chaperonins

scientific article published in March 2002

Gene transfer: anything goes in plant mitochondria

scientific article published on 22 December 2010

Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.

scientific article published on 15 September 2017

Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont.

scientific article

Genomic insights into plastid evolution

scientific article published on 13 May 2020

Heme pathway evolution in kinetoplastid protists

scientific article (publication date: 18 May 2016)

How a neutral evolutionary ratchet can build cellular complexity

scientific article published on July 2011

Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica

scientific article

Irremediable Complexity?

scientific article published in Science

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates

scientific article

Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes

scientific article published on 19 August 2020

Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut.

scientific article

Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans

scientific article

Localization and Evolution of Putative Triose Phosphate Translocators in the Diatom Phaeodactylum tricornutum

scientific article published on 9 October 2015

Massive mitochondrial DNA content in diplonemid and kinetoplastid protists

scientific article

More protist genomes needed

scientific article published on 20 April 2017

NEW MARINE MEMBERS OF THE GENUS HEMISELMIS (CRYPTOMONADALES, CRYPTOPHYCEAE)(1).

scientific article

NUCLEOMORPH KARYOTYPE DIVERSITY IN THE FRESHWATER CRYPTOPHYTE GENUS CRYPTOMONAS(1).

scientific article

Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life.

scientific article

Novel nucleomorph genome architecture in the cryptomonad genus hemiselmis

scientific article published in November 2006

Novel ubiquitin fusion proteins: ribosomal protein P1 and actin

scientific article published on May 2003

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

scientific article published on 28 November 2018

Nucleomorph Small RNAs in Cryptophyte and Chlorarachniophyte Algae

scientific article published in 2019

Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function

scientific article

Nucleomorph genome sequence of the cryptophyte alga Chroomonas mesostigmatica CCMP1168 reveals lineage-specific gene loss and genome complexity

scientific article

Nucleomorph ribosomal DNA and telomere dynamics in chlorarachniophyte algae

scientific article

On plant defense signaling networks and early land plant evolution

article

Organelle evolution: what's in a name?

scientific article

Overexpression of molecular chaperone genes in nucleomorph genomes

scientific article

Paratrypanosoma Is a Novel Early-Branching Trypanosomatid

scientific article (publication date: September 2013)

Phylogeny and nucleomorph karyotype diversity of chlorarachniophyte algae

scientific article

Plastid evolution: gene transfer and the maintenance of 'stolen' organelles

scientific article

Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny

scientific article

Plastid-targeting peptides from the chlorarachniophyte Bigelowiella natans

scientific article published in September 2004

Probing the evolution, ecology and physiology of marine protists using transcriptomics

scientific article published on 21 November 2016

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Insight into the diversity and evolution of the cryptomonad nucleomorph genome

scientific article published on 23 November 2005

Proteomics reveals plastid- and periplastid-targeted proteins in the chlorarachniophyte alga Bigelowiella natans

scientific article published on January 2012

Recycled plastids: a 'green movement' in eukaryotic evolution

scientific article

Reduced nuclear genomes maintain high gene transcription levels

scientific article

Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae

scientific article

Sizing up the genomic footprint of endosymbiosis

scientific article published on December 2009

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Submergence of the filamentous Zygnematophyceae Mougeotia induces differential gene expression patterns associated with core metabolism and photosynthesis

scientific article published on 22 December 2021

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

scientific article

The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution.

scientific article

The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate

scientific article

The eukaryotic tree of life: endosymbiosis takes its TOL.

scientific article

TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets

scientific article published on 15 February 2022

Treetrimmer: a method for phylogenetic dataset size reduction

scientific article

Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis

scientific article published on 14 January 2019

Ultrastructure and Molecular Phylogeny of the Cryptomonad Goniomonas avonlea sp. nov ⬇️

scientific article published on November 3, 2012

Why sequence all eukaryotes?

scientific article published on 01 January 2022

Widespread distribution of a unique marine protistan lineage

scientific article

Paulina is supported by:

About Paulina

Help