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List of works by Stan J. J. Brouns

9 Functional Genomics of the Thermo-Acidophilic Archaeon Sulfolobus solfataricus

A capture approach for supercoiled plasmid DNA using a triplex-forming oligonucleotide

scientific article published on 9 April 2013

Adsorption Sequencing as a Rapid Method to Link Environmental Bacteriophages to Hosts

scientific article published on 06 August 2020

An educational guide for nanopore sequencing in the classroom

scientific article published on 23 January 2020

An updated evolutionary classification of CRISPR-Cas systems

scientific article

Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain

scientific article

Assembling the archaeal ribosome: roles for translation-factor-related GTPases

scientific article published on January 2011

Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR-Cas effector complexes

scientific article published on 14 December 2017

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

scientific article published on 19 April 2012

CRISPR interference and priming varies with individual spacer sequences

scientific article

CRISPR interference directs strand specific spacer acquisition

scientific article

CRISPR sabotage

scientific article

CRISPR-Cas Systems Reduced to a Minimum.

scientific article published in February 2019

CRISPR-Cas systems preferentially target the leading regions of MOBF conjugative plasmids.

scientific article published on 27 March 2013

CRISPR-Cas: Adapting to change

scientific article published on 6 April 2017

CRISPR-based adaptive and heritable immunity in prokaryotes

scientific article published on 29 July 2009

CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.

scientific article published on 14 March 2013

Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation

scientific article published on 18 August 2016

Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation

scientific article published in March 2018

Cas4-Cas1 fusions drive efficient PAM selection and control CRISPR adaptation.

scientific article published in June 2019

Cascade-mediated binding and bending of negatively supercoiled DNA.

scientific article published on September 2012

Cloning and expression of islandisin, a new thermostable subtilisin from Fervidobacterium islandicum, in Escherichia coli

scientific article

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

scientific article published on 07 February 2011

Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG.

scientific article

Complete Genome Sequence of the Escherichia coli Phage Ayreon

scientific article published on 11 January 2018

Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages.

scientific article

Conserved motifs in the CRISPR leader sequence control spacer acquisition levels in Type I-D CRISPR-Cas systems

scientific article published on 01 June 2019

Craspase is a CRISPR RNA-guided, RNA-activated protease

scientific article published on 16 September 2022

Creation of Conductive Graphene Materials by Bacterial Reduction Using Shewanella Oneidensis

scientific article published on 04 July 2019

Crystal structure and biochemical properties of the D-arabinose dehydrogenase from Sulfolobus solfataricus

scientific article

DNA family shuffling of hyperthermostable beta-glycosidases

scientific article

DNA-guided DNA interference by a prokaryotic Argonaute

scientific article published on 16 February 2014

Degenerate target sites mediate rapid primed CRISPR adaptation.

scientific article

Development of styrene maleic acid lipid particles (SMALPs) as a tool for studies of phage-host interactions

scientific article published on 16 September 2020

Differential translation tunes uneven production of operon-encoded proteins

scientific article published on 5 September 2013

Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism

scientific article published on 14 November 2019

Electrophoretic Mobility Shift Assay of DNA and CRISPR-Cas Ribonucleoprotein Complexes.

scientific article published in January 2015

Engineering a selectable marker for hyperthermophiles

scientific article published on 7 January 2005

Evidence Supporting a cis-enediol-based Mechanism for Pyrococcus furiosus Phosphoglucose Isomerase

scientific article published on 24 March 2006

Evolution and classification of the CRISPR-Cas systems

scientific article (publication date: June 2011)

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages

scientific article published on 21 November 2019

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

scientific article published on 19 December 2019

Extracting Transition Rates in Particle Tracking Using Analytical Diffusion Distribution Analysis

scientific article published on 04 October 2020

Fidelity in archaeal information processing

scientific article published on 05 September 2010

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO.

scientific article

Harnessing type I CRISPR-Cas systems for genome engineering in human cells

scientific article published on 18 November 2019

High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers

scientific article published in 2022

Identification of a novel alpha-galactosidase from the hyperthermophilic archaeon Sulfolobus solfataricus

scientific article published on April 2006

Identification of the Missing Links in Prokaryotic Pentose Oxidation Pathways

scientific article published in Journal of Biological Chemistry

Improving the Performance of a Quadrupole Time-of-Flight Instrument for Macromolecular Mass Spectrometry

article

Inactivation of RNA and DNA viruses in water by copper and silver ions and their synergistic effect

scientific article published on 05 November 2020

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

scientific article

Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR-Cas system

scientific article published on 3 October 2016

Laboratory evolution of Pyrococcus furiosus alcohol dehydrogenase to improve the production of (2S,5S)-hexanediol at moderate temperatures.

scientific article

Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas

scientific article published on 29 September 2021

Molecular and Evolutionary Determinants of Bacteriophage Host Range

scientific article published on 01 September 2018

Molecular biology. A Swiss army knife of immunity

scientific article

Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa

scientific article

Planting the seed: target recognition of short guide RNAs.

scientific article published on 14 January 2014

Prophages are associated with extensive CRISPR-Cas auto-immunity

scientific article published on 21 November 2020

Purification, crystallization and preliminary crystallographic analysis of a GTP-binding protein from the hyperthermophilic archaeon Sulfolobus solfataricus

scientific article published on 28 February 2007

RNA in defense: CRISPRs protect prokaryotes against mobile genetic elements

scientific article published on June 2012

RNAi: prokaryotes get in on the act.

scientific article

Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis

scientific article published in March 2006

Repetitive DNA Reeling by the Cascade-Cas3 Complex in Nucleotide Unwinding Steps

scientific article published on 26 April 2018

Role of multiprotein bridging factor 1 in archaea: bridging the domains?

scientific article published on February 2009

Role of nucleotide identity in effective CRISPR target escape mutations

scientific article published on 01 November 2018

Selective loading and processing of prespacers for precise CRISPR adaptation

scientific article published on 19 February 2020

Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA

scientific article published in 2022

Small CRISPR RNAs guide antiviral defense in prokaryotes

scientific article

Structural basis for CRISPR RNA-guided DNA recognition by Cascade

scientific article

Structural basis for broad anti-phage immunity by DISARM

scientific article published on 27 May 2022

Structural biology. Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli

scientific article

Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily

scientific article

Structure of the ribosome associating GTPase HflX.

scientific article published in February 2010

Structures of the RNA-guided surveillance complex from a bacterial immune system

scientific article

Systematic analysis of Type I-E Escherichia coli CRISPR-Cas PAM sequences ability to promote interference and primed adaptation

scientific article published on 06 April 2019

Targeting mechanisms of tailed bacteriophages

scientific article published on 01 December 2018

The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity

scientific article

The rise and fall of CRISPRs – dynamics of spacer acquisition and loss ⬇️

scientific article published on July 23, 2012

The structures of inhibitor complexes of Pyrococcus furiosus phosphoglucose isomerase provide insights into substrate binding and catalysis

scientific article published in October 2004

Transcriptome Analysis of Infection of the Archaeon Sulfolobus solfataricus with Sulfolobus Turreted Icosahedral Virus.

scientific article published in July 2008

Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus.

scientific article published on 12 March 2008

Two distinct DNA binding modes guide dual roles of a CRISPR-Cas protein complex.

scientific article published on 5 March 2015

Type I-E CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition

scientific article

Using CAPTURE to detect spacer acquisition in native CRISPR arrays

scientific article published on 11 February 2019

Visualisation of dCas9 target search in vivo using an open-microscopy framework

scientific article published on 07 August 2019

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