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List of works by Kenneth D Birnbaum

A Case for Distributed Control of Local Stem Cell Behavior in Plants

scientific article

A gene expression map of the Arabidopsis root

scientific article

A map of cell type-specific auxin responses

scientific article

An Efficient Cell Sorting Protocol for Maize Protoplasts

scientific article published on 23 August 2018

An undergraduate study of two transcription factors that promote lateral root formation.

scientific article

Automated sorting of live C. elegans using laFACS.

scientific article published on 2 May 2010

Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines

scientific article published in August 2005

Cell-specific nitrogen responses mediate developmental plasticity

scholarly article

Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root.

scientific article

Development: Acting your cellular age

scientific article published on 07 July 2015

Directions for research and training in plant omics: Big Questions and Big Data

scientific article published on 23 April 2019

Epigenetic memory and cell fate reprogramming in plants

scientific article

First plant cell atlas workshop report

scientific article published on 15 October 2020

Fluorescence activated cell sorting of plant protoplasts.

scientific article

Fluorescence-Activated Cell Sorting for Analysis of Cell Type-Specific Responses to Salinity Stress in Arabidopsis and Rice ⬇️

scientific article published on January 1, 2012

Global studies of cell type-specific gene expression in plants

scientific article

High-throughput fluorescence-based isolation of live C. elegans larvae

scientific article (publication date: 19 July 2012)

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis

scientific article

How many ways are there to make a root?

scientific article

Identification of a Stelar-Localized Transport Protein That Facilitates Root-to-Shoot Transfer of Chloride in Arabidopsis.

scientific article published on 11 December 2015

Integrating gene flow, crop biology, and farm management in on‐farm conservation of avocado (Persea americana, Lauraceae) ⬇️

scientific article published on 01 November 2003

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture

scientific article published on 26 August 2013

Just passing through: The auxin gradient of the root meristem

scientific article published on 07 January 2020

Low-cost sequencing opens new insights into diverse plant genomes

scientific article published on 30 January 2012

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

scientific article published on 31 March 2020

Measuring cell identity in noisy biological systems ⬇️

scientific article published on July 29, 2011

Network building: transcriptional circuits in the root

scientific article

Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand.

scientific article published on 24 October 2011

Organ regeneration does not require a functional stem cell niche in plants

scientific article published on 28 January 2009

Plant Cell Shape: Trafficking Gets Edgy

scientific article published on 01 February 2016

Plasticity regulators modulate specific root traits in discrete nitrogen environments

scientific article

Positive fluorescent selection permits precise, rapid, and in-depth overexpression analysis in plant protoplasts

scientific article published on 23 January 2009

Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues

scientific article published on 07 September 2018

Predicting genome-wide redundancy using machine learning ⬇️

scientific article published on November 18, 2010

Primer and interviews: Gene regulation in Arabidopsis thaliana. Interview by Julie C. Kiefer

scientific article published in September 2009

Quantification of cell identity from single-cell gene expression profiles

scientific article

Quantitation of cellular dynamics in growing Arabidopsis roots with light sheet microscopy

scientific article (publication date: 2011)

Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.

scientific article published on February 2013

Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions

scientific article

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis

scientific article published on 18 January 2013

Slicing across kingdoms: regeneration in plants and animals

scientific article published on February 2008

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

scientific article published on 18 January 2013

The GATA factor HANABA TARANU is required to position the proembryo boundary in the early Arabidopsis embryo

scientific article

The Selaginella rhizophore has a unique transcriptional identity compared with root and shoot meristems

scientific article published on 11 December 2018

The potential of single-cell profiling in plants

scientific article published on 5 April 2016

Tissue-specific gene expression profiling by cell sorting

scientific article published in January 2015

Towards Building a Plant Cell Atlas

scientific article published on 16 February 2019

Transcriptional profile of the Arabidopsis root quiescent center

scientific article

Transcriptome dynamics of the stomatal lineage: birth, amplification, and termination of a self-renewing population.

scientific article

Using cauliflower to find conserved non-coding regions in Arabidopsis

scientific article published on 01 June 2002

Week-long imaging of cell divisions in the Arabidopsis root meristem

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