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List of works by Jian-Kang Zhu

A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.

scientific article

A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis

scientific article published on 14 December 2004

A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis

scientific article published on February 2012

A DNA ligase required for active DNA demethylation and genomic imprinting in Arabidopsis

scientific article published on 24 April 2015

A Novel Chemical Inhibitor of ABA Signaling Targets All ABA Receptors

scientific article published on 13 February 2017

A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis

scientific article

A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance.

scientific article published on 2 October 2006

A RAF-SnRK2 kinase cascade mediates early osmotic stress signaling in higher plants

scientific article published on 30 January 2020

A Role for PICKLE in the Regulation of Cold and Salt Stress Tolerance in Arabidopsis

scientific article published on 09 July 2019

A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis

scientific article published in August 2002

A cellulose synthase-like protein is required for osmotic stress tolerance in Arabidopsis

scientific article

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development

scientific article

A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.

scientific article

A group of SUVH methyl-DNA binding proteins regulate expression of the DNA demethylase ROS1 in Arabidopsis

scientific article published on 01 February 2019

A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value

scientific article

A histone H3K4me1-specific binding protein is required for siRNA accumulation and DNA methylation at a subset of loci targeted by RNA-directed DNA methylation

scientific article published on 07 June 2021

A histone acetyltransferase regulates active DNA demethylation in Arabidopsis

scientific article published on June 2012

A miRNA involved in phosphate-starvation response in Arabidopsis

scientific article

A mitochondrial complex I defect impairs cold-regulated nuclear gene expression

scientific article

A model for the aberrant DNA methylomes in aging cells and cancer cells

scientific article published on 18 July 2019

A naturally occurring epiallele associates with leaf senescence and local climate adaptation in Arabidopsis accessions.

scientific article published on 31 January 2018

A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2 ⬇️

scientific article published on September 22, 2003

A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation.

scientific article published on 09 December 2016

A pathogen-inducible endogenous siRNA in plant immunity

scientific article

A probabilistic method for small RNA flowgram matching.

scientific article

A probable Na+(K+)/H+ exchanger on the chloroplast envelope functions in pH homeostasis and chloroplast development in Arabidopsis thaliana

scholarly article

A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis

scientific article published on 14 August 2017

A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis

scientific article

A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress.

scientific article

A rice kinase-protein interaction map

article

A single amino acid substitution in the Arabidopsis FIERY1/HOS2 protein confers cold signaling specificity and lithium tolerance. ⬇️

scientific article published in November 2004

A viral suppressor protein inhibits host RNA silencing by hooking up with Argonautes

scientific article

A virus-encoded protein suppresses methylation of the viral genome through its interaction with AGO4 in the Cajal body

scientific article published on 16 October 2020

A virus-targeted plant receptor-like kinase promotes cell-to-cell spread of RNAi

scientific article published on 23 January 2018

ABA receptor PYL9 promotes drought resistance and leaf senescence

scientific article published on February 2016

ABA receptors: the START of a new paradigm in phytohormone signalling

scientific article published on 03 June 2010

ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis

scientific article

Abiotic stress signal transduction in plants: Molecular and genetic perspectives

scientific article (publication date: June 2001)

Abiotic stress tolerance: from gene discovery in model organisms to crop improvement

scientific article published on January 2009

Abscisic acid dynamics, signaling, and functions in plants

scientific article published on 01 January 2020

Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins

scientific article (publication date: 22 May 2009)

Abscisic acid-mediated epigenetic processes in plant development and stress responses

scientific article

Accession-Dependent CBF Gene Deletion by CRISPR/Cas System in Arabidopsis.

scientific article published on 7 November 2017

Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density.

scientific article published on 30 April 2008

Activation of the plasma membrane Na/H antiporter Salt-Overly-Sensitive 1 (SOS1) by phosphorylation of an auto-inhibitory C-terminal domain.

scientific article

Active DNA demethylation by oxidation and repair ⬇️

scientific article published on August 23, 2011

Active DNA demethylation in plants: 20 years of discovery and beyond

scientific article published in December 2022

Aequorin-Based Luminescence Imaging Reveals Stimulus- and Tissue-Specific Ca2+ Dynamics in Arabidopsis Plants ⬇️

scientific article published on January 31, 2013

Altered ABA, proline and hydrogen peroxide in an Arabidopsis glutamate:glyoxylate aminotransferase mutant

scientific article

An ABA-mimicking ligand that reduces water loss and promotes drought resistance in plants

scientific article

An AP endonuclease functions in active DNA demethylation and gene imprinting in Arabidopsis [corrected].

scientific article

An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress.

scientific article published on 12 December 2017

An Arabidopsis PWI and RRM motif-containing protein is critical for pre-mRNA splicing and ABA responses

scientific article

An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway.

scholarly article

An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures

scientific article

An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.

scientific article

An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis.

scientific article

An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis

scientific article published on January 2010

An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing.

scientific article

An autophosphorylation site of the protein kinase SOS2 is important for salt tolerance in Arabidopsis.

scientific article published on 06 January 2009

An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.

scientific article published on May 2009

An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response

scientific article

An unusual alphasatellite associated with monopartite begomoviruses attenuates symptoms and reduces betasatellite accumulation.

scientific article

Annotating genes of known and unknown function by large-scale coexpression analysis

scientific article published on 19 March 2008

Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis.

scientific article

Application of the CRISPR–Cas System for Efficient Genome Engineering in Plants ⬇️

scientific article published on August 22, 2013

Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin

scientific article published in Nature Communications

Arabidopsis Duodecuple Mutant of PYL ABA Receptors Reveals PYL Repression of ABA-Independent SnRK2 Activity

scientific article published on 01 June 2018

Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns

scientific article

Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo

scientific article

Arabidopsis mutant deficient in 3 abscisic acid-activated protein kinases reveals critical roles in growth, reproduction, and stress.

scholarly article

Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis

scientific article

Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein

scientific article published on 4 May 2007

Arabidopsis serine decarboxylase mutants implicate the roles of ethanolamine in plant growth and development

scientific article published on 7 March 2012

Arabinose biosynthesis is critical for salt stress tolerance in Arabidopsis

article published in 2019

Asg1 is a stress-inducible gene which increases stomatal resistance in salt stressed potato.

scientific article published on 31 July 2012

Assessing Kinase Activity in Plants with In-Gel Kinase Assays.

scientific article published on January 2016

AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta.

scientific article

BONZAI Proteins Control Global Osmotic Stress Responses in Plants

scientific article published on 01 October 2020

Biochemical and functional characterization of PKS11, a novel Arabidopsis protein kinase

scientific article published on 23 May 2002

Biochemical characterization of the Arabidopsis protein kinase SOS2 that functions in salt tolerance

scientific article published in September 2002

Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

scientific article

Bipartite anchoring of SCREAM enforces stomatal initiation by coupling MAP kinases to SPEECHLESS

scientific article published on 24 June 2019

Breeding exceptionally fragrant soybeans for soy milk with strong aroma

scientific article published on 23 February 2024

C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development.

scientific article

CDK8 is associated with RAP2.6 and SnRK2.6 and positively modulates abscisic acid signaling and drought response in Arabidopsis

scientific article published on 03 July 2020

CRISPR/Cas9-Based Genome Editing Toolbox for Arabidopsis thaliana

scientific article published on 01 January 2021

CRISPR/Cas9-mediated gene targeting in Arabidopsis using sequential transformation.

scientific article

CYCLIN-DEPENDENT KINASE8 differentially regulates plant immunity to fungal pathogens through kinase-dependent and -independent functions in Arabidopsis

scientific article published on 3 October 2014

Catalytic mechanism and kinase interactions of ABA-signaling PP2C phosphatases

scientific article

Cell signaling during cold, drought, and salt stress.

scientific article

Chemical probes in plant epigenetics studies

scientific article

Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis

scientific article

Circulating tumour DNA methylation markers for diagnosis and prognosis of hepatocellular carcinoma.

scientific article published on 9 October 2017

Cloning and characterization of microRNAs from rice

scientific article published in April 2005

Cloning and characterization of microRNAs from wheat (Triticum aestivum L.).

scientific article

Cold responsive gene transcription becomes more complex

scientific article published on 10 June 2015

Cold stress regulation of gene expression in plants.

scientific article published on 12 September 2007

Cold transiently activates calcium-permeable channels in Arabidopsis mesophyll cells

scientific article published in 2007

Combining chemical and genetic approaches to increase drought resistance in plants

scientific article published on 30 October 2017

Computational Analysis of Genome-Wide ARGONAUTE-Dependent DNA Methylation in Plants.

scientific article

Conservation of the salt overly sensitive pathway in rice

scientific article published on 01 December 2006

Constitutive activation and transgenic evaluation of the function of an arabidopsis PKS protein kinase.

scientific article published on 26 August 2002

Constitutive production of nitric oxide leads to enhanced drought stress resistance and extensive transcriptional reprogramming in Arabidopsis

scientific article

Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination

scientific article published in Nature

Control of Plant Water Use by ABA Induction of Senescence and Dormancy: An Overlooked Lesson from Evolution

scientific article published in August 2017

Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis

scientific article published on 04 December 2020

Criteria for annotation of plant MicroRNAs

scientific article published on 12 December 2008

Critical function of DNA methyltransferase 1 in tomato development and regulation of the DNA methylome and transcriptome

scientific article published on 19 April 2019

Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit

scientific article published on 15 May 2017

DNA demethylase ROS1 negatively regulates the imprinting of and seed dormancy in

article published in the Proceedings of the National Academy of Sciences of the United States of America

DNA demethylases are required for myo-inositol-mediated mutualism between plants and beneficial rhizobacteria

scientific article published on 13 July 2020

DNA methylation markers for diagnosis and prognosis of common cancers.

scientific article

DNA methylation markers in the diagnosis and prognosis of common leukemias

scientific article published on 10 January 2020

DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis

scientific article published on 16 July 2010

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV

scientific article published on May 2013

De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress

scientific article

De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks

scientific article

Developing naturally stress-resistant crops for a sustainable agriculture

scientific article published on 26 November 2018

Dicer-independent RNA-directed DNA methylation in Arabidopsis

scientific article published on 8 December 2015

Dicer-independent RNA-directed DNA methylation in Arabidopsis

scientific article published on November 2016

Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylation

scientific article published on 26 February 2021

Disruption of Arabidopsis CHY1 reveals an important role of metabolic status in plant cold stress signaling.

scientific article published in January 2009

Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis

scientific article

Dissecting the Subnuclear Localization Patterns of Argonaute Proteins and Other Components of the RNA-Directed DNA Methylation Pathway in Plants

scientific article published in January 2017

Distinctive core histone post-translational modification patterns in Arabidopsis thaliana

scientific article

Dolichol biosynthesis and its effects on the unfolded protein response and abiotic stress resistance in Arabidopsis.

scientific article

Double Repression in Jasmonate-Mediated Plant Defense ⬇️

scientific article published on May 23, 2013

Dynamics and function of DNA methylation in plants

article

EAR1 Negatively Regulates ABA Signaling by Enhancing 2C Protein Phosphatase Activity

scientific article published on 04 April 2018

EMS mutagenesis of Arabidopsis

scientific article published on 01 January 2006

EXPORTIN 1A prevents transgene silencing in Arabidopsis by modulating nucleo-cytoplasmic partitioning of HDA6

scientific article published on 28 March 2019

Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway

scientific article published on 22 March 2017

Efficient genome editing in plants using a CRISPR/Cas system.

scientific article published on 20 August 2013

Emerging roles of RNA processing factors in regulating long non-coding RNAs.

scientific article

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

scientific article

Endoplasmic reticulum-associated N-glycan degradation of cold-upregulated glycoproteins in response to chilling stress in Arabidopsis

scientific article

Epigenetic Modifications and Plant Hormone Action

scientific article

Epigenetic memory marks determine epiallele stability at loci targeted by de novo DNA methylation

scientific article published on 08 June 2020

Epigenetic regulation in plant abiotic stress responses

scientific article published on 24 December 2019

Epigenetic regulation of stress responses in plants

scientific article

Epigenetic switch from repressive to permissive chromatin in response to cold stress.

scientific article published on 21 May 2018

Epigenetics of the epigenome

scientific article published on 12 April 2011

Epigenome sequencing comes of age

scientific article published on May 2008

Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry

scientific article published on 10 March 2017

Expanding the base editing scope in rice by using Cas9 variants.

scientific article

Experimental reconstruction of double-stranded break repair-mediated plastid DNA insertion into the tobacco nucleus

scientific article published on 20 November 2017

Expression, activation, and biochemical properties of a novel Arabidopsis protein kinase

scientific article published on May 2002

Fluorometric determination of carbohydrate with 2-aminothiophenol

scientific article published in May 1991

Folate Polyglutamylation Is Involved in Chromatin Silencing by Maintaining Global DNA Methylation and Histone H3K9 Dimethylation in Arabidopsis ⬇️

scientific article published on July 23, 2013

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis

scientific article published on 16 October 2018

Functional gene-mining for salt-tolerance genes with the power of Arabidopsis

scientific article

Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress

scientific article published on 9 November 2006

Gene regulation during cold acclimation in plants

article

Gene regulation during cold stress acclimation in plants

scientific article

Gene targeting in Arabidopsis via an all-in-one strategy that uses a translational enhancer to aid Cas9 expression

scientific article published on 07 October 2019

Genome Engineering in Rice Using Cas9 Variants that Recognize NG PAM Sequences

scientific article published on 27 March 2019

Genome Structures and Halophyte-Specific Gene Expression of the Extremophile Thellungiella parvula in Comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis ⬇️

scientific article published on September 10, 2010

Genome editing for plant research and crop improvement

scientific article published on 24 December 2020

Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System

scientific article published on 20 June 2017

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.

scientific article

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa

scientific article published on 29 October 2008

Global increase in DNA methylation during orange fruit development and ripening

scientific article published on 11 January 2019

H2O2 inhibits ABA-signaling protein phosphatase HAB1.

scientific article

HOS1 regulates Argonaute1 by promoting transcription of the microRNA gene MIR168b in Arabidopsis.

scientific article

Heritability of targeted gene modifications induced by plant-optimized CRISPR systems

scientific article published on 27 September 2016

High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice

scientific article

High-Throughput Phosphorylation Screening and Validation through Ti(IV)-Nanopolymer Functionalized Reverse Phase Phosphoprotein Array

scientific article published on 23 August 2018

Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis

scientific article published on 30 July 2019

How many ways are there to generate small RNAs?

scientific article published on June 2010

ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis

scientific article

Identification and characterization of endogenous small interfering RNAs from rice

scientific article

Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes.

scientific article

Identification and mechanism of ABA receptor antagonism

scientific article

Identification of cold-inducible microRNAs in plants by transcriptome analysis.

scientific article

Identification of extracellular signal-regulated kinase 1 (ERK1) direct substrates using stable isotope labeled kinase assay-linked phosphoproteomics

scientific article

Identification of novel and candidate miRNAs in rice by high throughput sequencing

scientific article

Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis

scientific article published on 16 February 2007

Impaired lipid metabolism by age-dependent DNA methylation alterations accelerates aging

scientific article published on 06 February 2020

In vitro reconstitution of an abscisic acid signalling pathway

scientific article

Increasing freezing tolerance: kinase regulation of ICE1.

scientific article published in February 2015

Insights into salt tolerance from the genome of Thellungiella salsuginea

scientific article

Interaction network of core ABA signaling components in maize.

scientific article published on 17 January 2018

Interaction of SOS2 with nucleoside diphosphate kinase 2 and catalases reveals a point of connection between salt stress and H2O2 signaling in Arabidopsis thaliana

scientific article published on 4 September 2007

Interactions between soybean ABA receptors and type 2C protein phosphatases ⬇️

scientific article published on August 10, 2013

Interplay between cold-responsive gene regulation, metabolism and RNA processing during plant cold acclimation

scientific article published on 30 April 2007

Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance

scholarly article

Involvement of Multiple Gene-Silencing Pathways in a Paramutation-like Phenomenon in Arabidopsis

scientific article

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

scientific article published on 23 February 2011

Knock-down of rice microRNA166 confers drought resistance by causing leaf rolling and altering stem xylem development

scientific article published on 24 January 2018

LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase

scientific article published on June 2002

Large-scale eQTL identification in Arabidopsis reveals novel candidate regulators of immune responses and other processes

scientific article published on 04 April 2020

Leucine-rich repeat extensin proteins regulate plant salt tolerance in Arabidopsis

scientific article published on 04 December 2018

Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening

article

Loss of salt tolerance during tomato domestication conferred by variation in a Na+ /K+ transporter

scientific article published on 05 March 2020

MAP Kinase Cascades Regulate the Cold Response by Modulating ICE1 Protein Stability

scientific article

MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis

scientific article published on 22 October 2015

MYC-type transcription factors, MYC67 and MYC70, interact with ICE1 and negatively regulate cold tolerance in Arabidopsis

scientific article published in Scientific Reports

Manipulating plant RNA-silencing pathways to improve the gene editing efficiency of CRISPR/Cas9 systems

scientific article published on 28 September 2018

Mapping proteome-wide targets of protein kinases in plant stress responses

scientific article published on 28 January 2020

Measuring spatial and temporal Ca2+ signals in Arabidopsis plants

scientific article

Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues.

scientific article published on 15 March 2013

Mediator tail module subunits MED16 and MED25 differentially regulate abscisic acid signaling in Arabidopsis

scientific article published on 23 December 2020

Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status

scientific article published on February 2006

Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis

scientific article published on 15 January 2015

Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation

scientific article published on 05 July 2016

Molecular Mimicry Regulates ABA Signaling by SnRK2 Kinases and PP2C Phosphatases

scientific article

Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants.

scientific article published on 12 December 2003

Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis

scientific article published on 18 February 2014

Multiplex Gene Editing in Rice Using the CRISPR-Cpf1 System

scientific article published on 15 March 2017

Multiplex gene editing in rice with simplified CRISPR-Cpf1 and CRISPR-Cas9 systems

scientific article published on 07 July 2018

Mutation of SAD2, an importin beta-domain protein in Arabidopsis, alters abscisic acid sensitivity

scientific article published on 2 August 2006

Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis.

scientific article

Mutations in ABO1/ELO2, a subunit of holo-Elongator, increase abscisic acid sensitivity and drought tolerance in Arabidopsis thaliana

scientific article

Mutations in MIR396e and MIR396f increase grain size and modulate shoot architecture in rice

scientific article published on 16 August 2019

Mutations in a conserved replication protein suppress transcriptional gene silencing in a DNA-methylation-independent manner in Arabidopsis

scientific article published in November 2005

Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity

article published in the Proceedings of the National Academy of Sciences of the United States of America

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation

scientific article published on February 2009

Na+/H+ exchange activity in the plasma membrane of Arabidopsis

scientific article published on 15 May 2003

Natural variations in SlSOS1 contribute to the loss of salt tolerance during tomato domestication

scientific article published on 07 July 2020

New developments in abscisic acid perception and metabolism

scientific article published on 17 September 2007

New discoveries generate new questions about RNA-directed DNA methylation in Arabidopsis

scientific article published on 01 January 2017

Nitric Oxide and Hydrogen Peroxide Mediate Wounding-Induced Freezing Tolerance through Modifications in Photosystem and Antioxidant System in Wheat

scientific article published on 19 July 2017

Nitric oxide negatively regulates abscisic acid signaling in guard cells by S-nitrosylation of OST1

scientific article

Nitric oxide suppresses the inhibitory effect of abscisic acid on seed germination by S-nitrosylation of SnRK2 proteins

scientific article

Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.).

scientific article

Novel and nodulation-regulated microRNAs in soybean roots.

scientific article

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

scientific article

Nucleocytoplasmic Trafficking of the Arabidopsis WD40 Repeat Protein XIW1 Regulates ABI5 Stability and Abscisic Acid Responses

scientific article published on 08 July 2019

OSM1/SYP61: a syntaxin protein in Arabidopsis controls abscisic acid-mediated and non-abscisic acid-mediated responses to abiotic stress.

scientific article published on December 2002

Optimizing base editors for improved efficiency and expanded editing scope in rice

scientific article published on 18 May 2019

Osmogenetics: Aristotle to Arabidopsis

scientific article published in July 2006

Osmotic stress signaling via protein kinases ⬇️

scientific article published on July 25, 2012

Overexpression of SOS (Salt Overly Sensitive) genes increases salt tolerance in transgenic Arabidopsis.

scientific article published on 08 October 2008

Overexpression of a plasma membrane Na+/H+ antiporter gene improves salt tolerance in Arabidopsis thaliana

scientific article published on 09 December 2002

Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation

scientific article

Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis

scientific article published on 07 May 2019

Perspectives on the Application of Genome-Editing Technologies in Crop Breeding

scientific article published on 28 June 2019

Phosphoproteins in extracellular vesicles as candidate markers for breast cancer.

scientific article published on 7 March 2017

Plant abiotic stress response and nutrient use efficiency

scientific article published on 31 March 2020

Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance

scientific article

Precise A·T to G·C Base Editing in the Rice Genome

scientific article published on 21 February 2018

Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System

scientific article published on 5 December 2016

Precision genome engineering in rice using prime editing system

scientific article published on 06 May 2020

Preventing transcriptional gene silencing by active DNA demethylation

scientific article

Protein-protein interactions of tandem affinity purified protein kinases from rice

scientific article

Protocol: a beginner's guide to the analysis of RNA-directed DNA methylation in plants

scientific article

Quantitative Measurement of Phosphoproteome Response to Osmotic Stress in Arabidopsis Based on Library-Assisted eXtracted Ion Chromatogram (LAXIC) ⬇️

scientific article published on May 8, 2013

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action ⬇️

scientific article published on June 17, 2013

RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis.

scientific article

RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway.

scientific article

RETRACTED: HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants

scientific article

RNA Splicing Factors and RNA-Directed DNA Methylation.

scientific article

RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance.

scientific article

RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1

scientific article published on 03 September 2013

RNA-directed DNA methylation

scientific article published on 17 March 2011

RNA-directed DNA methylation and demethylation in plants.

scientific article

RNA-directed DNA methylation has an important developmental function in Arabidopsis that is masked by the chromatin remodeller PICKLE

scientific article published on 09 June 2020

RNA-directed DNA methylation in plants: Where to start?

scientific article published on October 2013

ROP11 GTPase negatively regulates ABA signaling by protecting ABI1 phosphatase activity from inhibition by the ABA receptor RCAR1/PYL9 in Arabidopsis

scientific article published on March 2012

ROR1/RPA2A, a putative replication protein A2, functions in epigenetic gene silencing and in regulation of meristem development in Arabidopsis

scientific article

ROS signaling and stomatal movement in plant responses to drought stress and pathogen attack.

scientific article published on 16 April 2018

ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase

scientific article published in December 2002

ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis.

scientific article published on 24 September 2008

Rapid and highly efficient construction of TALE-based transcriptional regulators and nucleases for genome modification

scientific article published on 22 January 2012

Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis

scientific article

Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response

scientific article published on 27 December 2017

Reciprocal regulation between nicotinamide adenine dinucleotide metabolism and abscisic acid and stress response pathways in Arabidopsis

scientific article published on 22 June 2020

Recognition of a PP2C interaction motif in several plant protein kinases

scientific article published on 01 January 2007

Recognition of methylated DNA by TAL effectors

scientific article published on 4 September 2012

Reconstituting plant miRNA biogenesis

scholarly article

Reconstitution in yeast of the Arabidopsis SOS signaling pathway for Na+ homeostasis.

scientific article

Regenerant Arabidopsis lineages display a distinct genome-wide spectrum of mutations conferring variant phenotypes

scientific article

Regulation and function of DNA methylation in plants and animals.

scientific article

Regulation of Osmotic Stress-responsive Gene Expression by theLOS6/ABA1 Locus inArabidopsis ⬇️

scientific article published on January 4, 2002

Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3.

scientific article

Regulation of abscisic acid biosynthesis.

scientific article published in September 2003

Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis

scientific article

Regulation of expression of the vacuolar Na+/H+ antiporter gene AtNHX1 by salt stress and abscisic acid

scientific article published in October 2002

Regulation of vacuolar Na+/H+ exchange in Arabidopsis thaliana by the salt-overly-sensitive (SOS) pathway

scientific article published on 21 October 2003

Regulatory link between DNA methylation and active demethylation in Arabidopsis

scientific article

Repression of stress-responsive genes by FIERY2, a novel transcriptional regulator in Arabidopsis

scientific article

Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis

scientific article

Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants

scientific article published on 9 July 2010

Retrospective and perspective of plant epigenetics in China

scientific article published on 06 November 2018

Rhizobacterium-derived diacetyl modulates plant immunity in a phosphate-dependent manner

scientific article published on 05 December 2019

Rice Protein Tagging Project: A Call for International Collaborations on Genome-Wide in-locus Tagging of Rice Proteins

scientific article published on 12 November 2020

Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

scientific article published on March 2007

Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses

scientific article

Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation

scholarly article

Roles of DEMETER in regulating DNA methylation in vegetative tissues and pathogen resistance

scientific article published on 25 November 2020

Roles of Nuclear Pores and Nucleo-cytoplasmic Trafficking in Plant Stress Responses.

scientific article published on 12 April 2017

SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis.

scientific article published on 26 September 2016

SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.

scientific article

SIK1/SOS2 networks: decoding sodium signals via calcium-responsive protein kinase pathways.

scientific article published on 27 February 2009

SIZ1-mediated SUMOylation of ROS1 Enhances Its Stability and Positively Regulates Active DNA Demethylation in Arabidopsis

scientific article published on 11 September 2020

SNP calling using genotype model selection on high-throughput sequencing data.

scientific article

SOS2 promotes salt tolerance in part by interacting with the vacuolar H+-ATPase and upregulating its transport activity

scientific article

SOS4, a pyridoxal kinase gene, is required for root hair development in Arabidopsis.

scientific article published in June 2002

STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis

scientific article published on 24 December 2012

STABILIZED1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis

scientific article

STCH4/REIL2 Confers Cold Stress Tolerance in Arabidopsis by Promoting rRNA Processing and CBF Protein Translation

scientific article published on 01 January 2020

SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis

scientific article

SYNTAXIN OF PLANTS81 regulates root meristem activity and stem cell niche maintenance via ROS signaling

scientific article published in 2022

Salt Tolerance

scientific article (publication date: 2002)

Salt and drought stress signal transduction in plants

scientific article

Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles.

scientific article published on 9 July 2004

Salt stress affects cortical microtubule organization and helical growth in Arabidopsis.

scientific article published on 22 July 2006

Salt stress signaling and mechanisms of plant salt tolerance

scientific article

Screening for gene regulation mutants by bioluminescence imaging.

scientific article

Seeing the forest for the trees: a wide perspective on RNA-directed DNA methylation.

scientific article published on August 2012

Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits

scientific article published in May 2017

Simplified adenine base editors improve adenine base editing efficiency in rice

scientific article published on 19 September 2019

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. ⬇️

scientific article

Small RNAs as big players in plant abiotic stress responses and nutrient deprivation

scientific article published on 18 June 2007

Specific but interdependent functions for Arabidopsis AGO4 and AGO6 in RNA-directed DNA methylation

scientific article

Spliceosomal protein U1A is involved in alternative splicing and salt stress tolerance in Arabidopsis thaliana

scientific article published on 8 December 2017

Stomatal guard cells co-opted an ancient ABA-dependent desiccation survival system to regulate stomatal closure

scientific article published on 19 March 2015

Structural Basis for Sequence-Specific Recognition of DNA by TAL Effectors

scientific article

Structural basis for RNA recognition by a dimeric PPR-protein complex

scientific article

Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases

scientific article

Structural mechanisms of RNA recognition: sequence-specific and non-specific RNA-binding proteins and the Cas9-RNA-DNA complex

scientific article

Structure determination and activity manipulation of the turfgrass ABA receptor FePYR1.

scientific article published on 25 October 2017

Structure of a PLS-class Pentatricopeptide Repeat Protein Provides Insights into Mechanism of RNA Recognition

scientific article

Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II

scientific article

Sulfamethazine suppresses epigenetic silencing in Arabidopsis by impairing folate synthesis.

scientific article published on 23 March 2012

Sulfate availability affects ABA levels and germination response to ABA and salt stress in Arabidopsis thaliana.

scientific article

TPST is involved in fructose regulation of primary root growth in Arabidopsis thaliana

scientific article published on 11 April 2020

Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein.

scientific article

Targeted, efficient sequence insertion and replacement in rice

scientific article published on 06 July 2020

The 1001 Arabidopsis DNA Methylomes: An Important Resource for Studying Natural Genetic, Epigenetic, and Phenotypic Variation

scientific article published on 16 September 2016

The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes.

scientific article published on 3 June 2014

The ABA receptor PYL9 together with PYL8 plays an important role in regulating lateral root growth

scientific article published on 03 June 2016

The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance.

scientific article

The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion

scientific article published on 01 January 2003

The Arabidopsis STRESS RESPONSE SUPPRESSOR DEAD-box RNA helicases are nucleolar- and chromocenter-localized proteins that undergo stress-mediated relocalization and are involved in epigenetic gene silencing.

scientific article published on 27 May 2014

The Arabidopsis Vacuolar Sorting Receptor1 is required for osmotic stress-induced abscisic acid biosynthesis

scientific article published in 2015

The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.

scientific article

The Arabidopsis salt overly sensitive 4 mutants uncover a critical role for vitamin B6 in plant salt tolerance.

scientific article published in March 2002

The BASL polarity protein controls a MAPK signaling feedback loop in asymmetric cell division.

scientific article published on 2 April 2015

The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production

scientific article published on 15 May 2020

The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation

scientific article published on 23 May 2014

The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications

scientific article published on 31 October 2016

The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis.

scientific article

The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs ⬇️

scientific article published on July 22, 2013

The SOS3 family of calcium sensors and SOS2 family of protein kinases in Arabidopsis

scientific article published on March 2004

The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation

scientific article published on 25 April 2016

The SnRK2 kinases modulate miRNA accumulation in Arabidopsis.

scientific article published on 18 April 2017

The Structure of Arabidopsis thaliana OST1 Provides Insights into the Kinase Regulation Mechanism in Response to Osmotic Stress

scientific article

The broad roles of CBF genes: From development to abiotic stress

scientific article published on 29 July 2016

The cell biology of primary cell walls during salt stress

scientific article published on 23 September 2022

The chromatin remodeler DDM1 promotes hybrid vigor by regulating salicylic acid metabolism

scientific article (publication date: 2016)

The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci

scientific article

The genome of broomcorn millet

scientific article published in Nature Communications

The genome of the extremophile crucifer Thellungiella parvula

scientific article

The grain yield modulator miR156 regulates seed dormancy through the gibberellin pathway in rice

scientific article published on 23 August 2019

The inhibition of protein translation mediated by AtGCN1 is essential for cold tolerance in Arabidopsis thaliana

scientific article

The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing

scientific article

The miR165/166 Mediated Regulatory Module Plays Critical Roles in ABA Homeostasis and Response in Arabidopsis thaliana

scientific article

The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1.

scholarly article

The plant cuticle is required for osmotic stress regulation of abscisic acid biosynthesis and osmotic stress tolerance in Arabidopsis

article

The plasma membrane Na+/H+ antiporter SOS1 interacts with RCD1 and functions in oxidative stress tolerance in Arabidopsis

scholarly article

The plasma-membrane polyamine transporter PUT3 is regulated by the Na+ /H+ antiporter SOS1 and protein kinase SOS2

scientific article published on 06 February 2020

The protein kinase TOUSLED is required for maintenance of transcriptional gene silencing in Arabidopsis

scientific article published on 17 November 2006

The putative plasma membrane Na(+)/H(+) antiporter SOS1 controls long-distance Na(+) transport in plants

scientific article published on 01 February 2002

The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration

scientific article published on 20 April 2015

The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis ⬇️

scientific article published on March 22, 2013

The structure of the Arabidopsis thaliana SOS3: molecular mechanism of sensing calcium for salt stress response

scientific article published on 08 December 2004

The structure of the C-terminal domain of the protein kinase AtSOS2 bound to the calcium sensor AtSOS3.

scientific article

The transcription factor ICE1 functions in cold stress response by binding to the promoters of CBF and COR genes

scientific article published on 01 March 2020

The unique mode of action of a divergent member of the ABA-receptor protein family in ABA and stress signaling.

scientific article

Thriving under Stress: How Plants Balance Growth and the Stress Response

scientific article published on 01 December 2020

Transcription of nuclear organellar DNA in a model plant system.

scientific article published on 27 May 2014

Transcriptomic and physiological variations of three Arabidopsis ecotypes in response to salt stress

scientific article published on 23 July 2013

Transgenerational increases in DNA methylation in <i>Arabidopsis</i> plants defective in active DNA demethylation

scientific article published on 20 May 2024

Transgenic evaluation of activated mutant alleles of SOS2 reveals a critical requirement for its kinase activity and C-terminal regulatory domain for salt tolerance in Arabidopsis thaliana.

scientific article published on 23 January 2004

Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants.

scientific article

Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways

scientific article published on 27 November 2019

Two Chloroplast Proteins Suppress Drought Resistance by Affecting ROS Production in Guard Cells.

scientific article published on 15 October 2016

Two domain-disrupted hda6 alleles have opposite epigenetic effects on transgenes and some endogenous targets

scientific article

Type One Protein Phosphatase 1 and Its Regulatory Protein Inhibitor 2 Negatively Regulate ABA Signaling.

scientific article

UTR-Dependent Control of Gene Expression in Plants

scientific article published on 6 December 2017

Understanding and Improving Salt Tolerance in Plants

article

Understanding the Molecular Basis of Salt Sequestration in Epidermal Bladder Cells of Chenopodium quinoa

scientific article published on 20 September 2018

Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress

scientific article published on 13 July 2018

Upstream kinases of plant SnRKs are involved in salt stress tolerance

scientific article published in November 2017

Using Arabidopsis-related model species (ARMS): growth, genetic transformation, and comparative genomics

scientific article published on 01 January 2014

What makes species unique? The contribution of proteins with obscure features

scientific article published on January 2006

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