List of works - Matthieu Leray

A new species of Alpheus Fabricius, 1798 (Decapoda: Caridea: Alpheidae) from the Caribbean coast of Panama

scientific article

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

scientific article

Acanthaster planci outbreak: decline in coral health, coral size structure modification and consequences for obligate decapod assemblages

scientific article

Allopatric divergence and speciation in coral reef fish: the three-spot dascyllus, Dascyllus trimaculatus, species complex.

scientific article published on 4 December 2009

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism

scientific article published in 2018

Censusing marine eukaryotic diversity in the twenty-first century

scientific article

Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management

article by Lynne van Herwerden et al published 16 April 2009 in Marine Biology

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

scientific article

DNA metabarcoding provides insights into the diverse diet of a dominant suspension feeder, the giant plumose anemone Metridium farcimen

scientific article published in 2021

Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red Sea.

scientific article

Dietary partitioning promotes the coexistence of planktivorous species on coral reefs

scientific article published on 13 May 2019

Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two coral reef fish species

scientific article

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

scientific article published on 21 April 2020

Evaluating biodiversity for coral reef reformation and monitoring on complex 3D structures using environmental DNA (eDNA) metabarcoding

scientific article published in 2023

Five new records of marine shrimps (Decapoda: Caridea, Stenopodidea) from the Caribbean coast of Panama

scientific article

GenBank is a reliable resource for 21st century biodiversity research

scientific article published on 21 October 2019

Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups

scientific article

Host-associated microbiomes drive structure and function of marine ecosystems

scientific article published on 11 November 2019

Housekeeping mutualisms: do more symbionts facilitate host performance?

scientific article

Hyperdiverse Macrofauna Communities Associated with a Common Sponge, Stylissa carteri, Shift across Ecological Gradients in the Central Red Sea

scientific article published in 2019

Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis.

scientific article

MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database

scientific article published on 01 November 2018

MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences

scientific article published in 2022

Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet.

scientific article published on 25 June 2015

Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples

scientific article

Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution

publication published on 19 August 2021

New findings of the stenopodidean shrimp Microprosthema looensis Goy & Felder, 1988 (Decapoda: Stenopodidea: Spongicolidae)

scientific article

Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Adapter Ligation Method

scientific article

Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Dual-PCR Method

scientific article

Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding

scientific article

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef

scientific article published on 26 July 2021

Recent and old duplications in crustaceans "Internal Transcribed Spacer 1″: structural and phylogenetic implications

scientific article published on 15 July 2019

Reply to Locatelli et al.: Evaluating species-level accuracy of GenBank metazoan sequences will require experts' effort in each group

scientific article published on 24 November 2020

Seabed mining could come at a high price for a unique fauna

scientific article published on 08 October 2020

The Coral Reef Sentinels Program: A Mars Shot for Blue Planetary Health

scientific article published on 14 June 2021

The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia

scientific article

Two new species of Typton Costa, 1844 from tropical American waters, with taxonomic notes on T. tortugae McClendon, 1911 and a new record of T. granulosus Ayón-Parente, Hendrickx & Galvan-Villa, 2015 (Decapoda: Caridea: Palaemonidae)

scientific article

Unresolved taxonomy confounds invasive species identification: the Lysmata vittata Stimpson, 1860 (Decapoda: Caridea: Lysmatidae) species complex and recent introduction of Lysmata vittata sensu stricto in the western Atlantic

scientific article published in 2022

Visualizing Patterns of Marine Eukaryotic Diversity from Metabarcoding Data Using QIIME.

scientific article

List of works by Matthieu Leray

A new species of Alpheus Fabricius, 1798 (Decapoda: Caridea: Alpheidae) from the Caribbean coast of Panama

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

Acanthaster planci outbreak: decline in coral health, coral size structure modification and consequences for obligate decapod assemblages

Allopatric divergence and speciation in coral reef fish: the three-spot dascyllus, Dascyllus trimaculatus, species complex.

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism

Censusing marine eukaryotic diversity in the twenty-first century

Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

DNA metabarcoding provides insights into the diverse diet of a dominant suspension feeder, the giant plumose anemone <i>Metridium farcimen</i>

Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red Sea.

Dietary partitioning promotes the coexistence of planktivorous species on coral reefs

Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two coral reef fish species

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

Evaluating biodiversity for coral reef reformation and monitoring on complex 3D structures using environmental DNA (eDNA) metabarcoding

Five new records of marine shrimps (Decapoda: Caridea, Stenopodidea) from the Caribbean coast of Panama

GenBank is a reliable resource for 21st century biodiversity research

Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups

Host-associated microbiomes drive structure and function of marine ecosystems

Housekeeping mutualisms: do more symbionts facilitate host performance?

Hyperdiverse Macrofauna Communities Associated with a Common Sponge, Stylissa carteri, Shift across Ecological Gradients in the Central Red Sea

Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis.

MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database

MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences

Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet.

Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples

Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution

New findings of the stenopodidean shrimp Microprosthema looensis Goy & Felder, 1988 (Decapoda: Stenopodidea: Spongicolidae)

Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Adapter Ligation Method

Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Dual-PCR Method

Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef

Recent and old duplications in crustaceans "Internal Transcribed Spacer 1″: structural and phylogenetic implications

Reply to Locatelli et al.: Evaluating species-level accuracy of GenBank metazoan sequences will require experts' effort in each group

Seabed mining could come at a high price for a unique fauna

The Coral Reef Sentinels Program: A Mars Shot for Blue Planetary Health

The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia

Two new species of Typton Costa, 1844 from tropical American waters, with taxonomic notes on T. tortugae McClendon, 1911 and a new record of T. granulosus Ayón-Parente, Hendrickx & Galvan-Villa, 2015 (Decapoda: Caridea: Palaemonidae)

Unresolved taxonomy confounds invasive species identification: the <i>Lysmata vittata</i> Stimpson, 1860 (Decapoda: Caridea: Lysmatidae) species complex and recent introduction of <i>Lysmata vittata</i> sensu stricto in the western Atlantic

Visualizing Patterns of Marine Eukaryotic Diversity from Metabarcoding Data Using QIIME.