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List of works by Gary R. Carvalho

A DNA-based approach for the forensic identification of Asiatic black bear (Ursus thibetanus) in a traditional Asian medicine

scientific article

A common garden design reveals population-specific variability in potential impacts of hybridization between populations of farmed and wild Atlantic salmon, Salmo salar L.

scientific article published on 27 January 2016

A genomic island linked to ecotype divergence in Atlantic cod.

scientific article published in May 2013

A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal ⬇️

scientific article published on April 25, 2012

A reliable DNA barcode reference library for the identification of the North European shelf fish fauna.

scientific article

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

article

Age of cichlids: new dates for ancient lake fish radiations

scientific article

An integrated spatio-temporal view of riverine biodiversity using environmental DNA metabarcoding

scientific article published in 2024

An ‛Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks

scientific article

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

scientific article

Artificial introductions, evolutionary change and population differentiation in Trinidadian guppies (Poecilia reticulata: Poeciliidae)

scientific article published in March 1996

Association between Growth andPan I*Genotype within Atlantic Cod Full-Sibling Families

Author Correction: Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

scientific article published on 22 November 2019

Biocomplexity in a highly migratory pelagic marine fish, Atlantic herring

article

Biogeography of the Indo-Australian Archipelago

article (2011)

Book Reviews

Borneo and Indochina are major evolutionary hotspots for Southeast Asian biodiversity.

scientific article

Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing

article

Comparative genetic stock structure in three species of commercially exploited Indo-Malay Carangidae (Teleosteii, Perciformes)

scientific article published on 15 December 2019

Concordance of allozyme and microsatellite differentiation in a marine fish, but evidence of selection at a microsatellite locus

article

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY

DNA barcoding reveals cryptic diversity within commercially exploited Indo-Malay Carangidae (Teleosteii: Perciformes).

scientific article

Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates

scientific article published on 13 April 2019

Demographic reconstruction from ancient DNA supports rapid extinction of the great auk

scientific article published on 26 November 2019

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

scientific article published on 09 August 2019

Detection of novel and resident marine species using environmental DNA metabarcoding of sediment and water

Development and application of microsatellites in Carcinus maenas: genetic differentiation between Northern and Central Portuguese populations

scientific article

Development of 30 microsatellite markers for dab (Limanda limanda L.): a key UK marine biomonitoring species.

scientific article published on 3 February 2009

Disentangling the effects of sex, life history and genetic background in Atlantic salmon: growth, heart and liver under common garden conditions

scientific article published on 07 October 2020

Does density influence relative growth performance of farm, wild and F1 hybrid Atlantic salmon in semi-natural and hatchery common garden conditions?

scientific article

Domestication-induced reduction in eye size revealed in multiple common garden experiments: The case of Atlantic salmon (<i>Salmo salar</i> L.).

scientific article published on 21 September 2021

Environmental DNA for wildlife biology and biodiversity monitoring

scientific article

Environmental DNA metabarcoding for fish diversity assessment in a macrotidal estuary: A comparison with established fish survey methods

scientific article published in November 2023

Environmental DNA provides higher resolution assessment of riverine biodiversity and ecosystem function via spatio-temporal nestedness and turnover partitioning

scientific article published on 03 May 2021

Environmental DNA size sorting and degradation experiment indicates the state of Daphnia magna mitochondrial and nuclear eDNA is subcellular

scientific article published on 29 August 2019

Environmental correlates of population differentiation in Atlantic herring

scientific article published in December 2005

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus).

scientific article published on 13 June 2012

Epistatic regulation of growth in Atlantic salmon revealed: a QTL study performed on the domesticated-wild interface

scientific article published on 07 February 2020

Erratum: Corrigendum: Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

scientific article published in Nature Communications

Erratum: Environmental DNA for wildlife biology and biodiversity monitoring

scholarly article published in Trends in Ecology & Evolution

Evolution of a cichlid fish in a Lake Malawi satellite lake

scientific article (publication date: 22 September 2007)

Evolutionary drivers of kype size in Atlantic salmon (Salmo salar): domestication, age and genetics

scientific article published on 17 April 2019

Executing multi-taxa eDNA ecological assessment via traditional metrics and interactive networks

scientific article published on 21 April 2020

Experimental harvesting of fish populations drives genetically based shifts in body size and maturation

scientific article published in 2013

Faunal histories from Holocene ancient DNA.

scientific article

Fish product mislabelling: failings of traceability in the production chain and implications for illegal, unreported and unregulated (IUU) fishing

scientific article

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

scientific article published on 22 May 2012

Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).

scientific article

Heterogeneous evolution of microsatellites revealed by reconstruction of recent mutation history in an invasive apomictic snail, Potamopyrgus antipodarum

scientific article published in May 2006

Introduction of the Evidence synthesis: article type.

scientific article

Investigating the molecular systematic relationships amongst selectedPlesionika(Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea

scientific article published in 2012

Isolation and characterization of 28 new microsatellite markers for European flounder (Platichthys flesus L.).

scientific article published on 12 March 2009

Life in a drop: Sampling environmental DNA for marine fishery management and ecosystem monitoring

scientific article published in 2021

Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus)

scientific article

Managing human-mediated range shifts: understanding spatial, temporal and genetic variation in marine non-native species

scientific article

Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon

scientific article

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

article

Mitochondrial DNA phylogeography and mating compatibility reveal marked genetic structuring and speciation in the NE Atlantic bryozoan Celleporella hyalina

scientific article

Molecular biogeography and phylogeography of the freshwater fauna of the Indo-Australian Archipelago

scientific article

Molecular characterization of a marine turtle tumor epizootic, profiling external, internal and postsurgical regrowth tumors

scientific article published on 01 February 2021

Molecular phylogeny supports division of the ‘cosmopolitan’ taxon Celleporella (Bryozoa; Cheilostomata) into four major clades

scientific article published on 02 September 2007

Multigene molecular systematics confirm species status of morphologically convergent Pagurus hermit crabs

scientific article (publication date: 2011)

New insights into molecular evolution: prospects from the Barcode of Life Initiative (BOLI).

scientific article

No Evidence for Kin-Preferential Swarming in a Daphnia magna Population Coexisting with Fish

article

Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake

scientific article

Oceanography and life history predict contrasting genetic population structure in two Antarctic fish species

scientific article

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius).

scientific article

Paleo-drainage basin connectivity predicts evolutionary relationships across three Southeast Asian biodiversity hotspots

scientific article

Paradoxical polyembryony? Embryonic cloning in an ancient order of marine bryozoans

scientific article (publication date: 22 June 2005)

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples

scientific article published on 18 April 2018

Phylogenomics and species delimitation for effective conservation of manta and devil rays

scientific article published on 09 November 2020

Plastic and heritable components of phenotypic variation in Nucella lapillus: an assessment using reciprocal transplant and common garden experiments

scientific article

Plastic and heritable variation in shell thickness of the intertidal gastropod Nucella lapillus associated with risks of crab predation and wave action, and sexual maturation

scientific article

Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax

scientific article

Population genetics provides new insights into biomarker prevalence in dab (Limanda limanda L.): a key marine biomonitoring species

scientific article published on 23 May 2013

Population structure on breeding grounds of Lake Malawi’s ‘twilight zone’ cichlid fishes

scholarly article published in February 2010

Population-level consequences for wild fish exposed to sublethal concentrations of chemicals - a critical review

article

Power for detecting genetic divergence: differences between statistical methods and marker loci

scientific article published in July 2006

Publisher Correction: Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

scientific article published on 07 February 2020

Range-wide genomic data synthesis reveals transatlantic vicariance and secondary contact in Atlantic cod

scientific article published on 16 November 2018

Recommendations for developing and applying genetic tools to assess and manage biological invasions in marine ecosystems ⬇️

scientific article published in January 2017

Reconstruction of microsatellite mutation history reveals a strong and consistent deletion bias in invasive clonal snails, Potamopyrgus antipodarum. ⬇️

scientific article published on October 2002

Reproductive isolation among deep-water cichlid fishes of Lake Malawi differing in monochromatic male breeding dress

scientific article published in February 2007

SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing

scientific article

SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus)

scientific article

Second-generation environmental sequencing unmasks marine metazoan biodiversity

scientific article

Speciation in ancient cryptic species complexes: evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera).

scientific article

Stepping stones to isolation: Impacts of a changing climate on the connectivity of fragmented fish populations.

scientific article

Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca).

scientific article

Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua).

scientific article published in October 2003

The Barcode of Life Initiative: Reply to Dupré, Hollingsworth and Holm.

scientific article

The Barcode of Life Initiative: synopsis and prospective societal impacts of DNA barcoding of Fish.

scientific article published on 15 August 2007

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

scientific article

Time and space in biogeography: response to Parenti & Ebach (2013)

scholarly article by Mark de Bruyn et al published 21 June 2013 in Journal of Biogeography

Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus.

scientific article

Validation of the barcoding gene COI for use in forensic genetic species identification

scientific article published on 14 February 2007

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes

scientific article published in February 2018

Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos

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