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List of works by Sung-Keun Rhee

A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment

scientific article published on 4 October 2016

A lipophilic fluorescent LipidGreen1-based quantification method for high-throughput screening analysis of intracellular poly-3-hydroxybutyrate

scientific article published on 9 August 2015

A mesophilic, autotrophic, ammonia-oxidizing archaeon of thaumarchaeal group I.1a cultivated from a deep oligotrophic soil horizon

scientific article

A novel methanotroph in the genus Methylomonas that contains a distinct clade of soluble methane monooxygenase.

scientific article

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics

scientific article

An improved protocol with a highly degenerate primer targeting copper-containing membrane-bound monooxygenase genes for community analysis of methane- and ammonia-oxidizing bacteria

scientific article published on 8 December 2016

An uncultivated nitrate-reducing member of the genus Herminiimonas degrades toluene

scientific article

Anaerobic dehalogenation of organohalide contaminants in the marine environment

scientific article published on January 2003

Anaerosolibacter carboniphilus gen. nov., sp. nov., a strictly anaerobic iron-reducing bacterium isolated from coal-contaminated soil.

scientific article

Application of DNA microarray for screening metagenome library clones

scientific article

Aptamer-Based Paper Strip Sensor for Detecting Vibrio fischeri

scientific article published on 22 March 2018

Aptamer-Based Pathogen Monitoring for Salmonella enterica ser. Typhimurium

scientific article published on 01 November 2018

Aptamer-Immobilized Surface Plasmon Resonance Biosensor for Rapid and Sensitive Determination of Virulence Determinant

scientific article published in May 2018

Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants

scientific article published on 17 October 2019

Arthrobacter subterraneus sp. nov., isolated from deep subsurface water of the South Coast of Korea

scientific article

Bacteria involved in the sulfur cycle in tarballs collected from the Alabama Gulf Coast

scholarly article published in 2024

Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

Biogeochemical Remediation of Cr(VI)-Contaminated Groundwater using MMPH-0 (Enterobacter aerogenes)

scientific article published in 2012

Calculibacillus koreensis gen. nov., sp. nov., an anaerobic Fe(III)-reducing bacterium isolated from sediment of mine tailings

scientific article

Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost.

scientific article published in February 2002

Characterization of the depth-related changes in the microbial communities in Lake Hovsgol sediment by 16S rRNA gene-based approaches

scientific article

Characterization of the fecal microbiome in different swine groups by high-throughput sequencing.

scientific article

Clostridium hastiforme is a later synonym of Tissierella praeacuta

scientific article

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments

scientific article

Comparative genomic analysis of Geosporobacter ferrireducens and its versatility of anaerobic energy metabolism

scientific article published on 2 May 2018

Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments

scientific article (publication date: May 2011)

Correction to: Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya

scholarly article published in Microbiome

Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil

scientific article published on 20 April 2012

Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria

scientific article

Description of Fimbriimonas ginsengisoli gen. nov., sp. nov. within the Fimbriimonadia class nov., of the phylum Armatimonadetes ⬇️

scientific article published on April 25, 2012

Design of long oligonucleotide probes for functional gene detection in a microbial community

scientific article published on 13 September 2005

Desulfotomaculum tongense sp. nov., a moderately thermophilic sulfate-reducing bacterium isolated from a hydrothermal vent sediment collected from the Tofua Arc in the Tonga Trench

scientific article

Detection and Diversity of the Nitrite Oxidoreductase Alpha Subunit (nxrA) Gene of Nitrospina in Marine Sediments

scientific article published on 22 November 2016

Detection and characterization of a dehalogenating microorganism by terminal restriction fragment length polymorphism fingerprinting of 16S rRNA in a sulfidogenic, 2-bromophenol-utilizing enrichment

scientific article published on February 2004

Detection by PCR of reductive dehalogenase motifs in a sulfidogenic 2-bromophenol-degrading consortium enriched from estuarine sediment

scientific article published in April 2003

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

scientific article published on July 2004

Detection of representative enteropathogenic bacteria, Vibrio spp., pathogenic Escherichia coli, Salmonella spp., Shigella spp., and Yersinia enterocolitica, using a virulence factor gene-based oligonucleotide microarray

scientific article published on October 2010

Determination of cyanobacterial diversity during algal blooms in Daechung Reservoir, Korea, on the basis of cpcBA intergenic spacer region analysis.

scientific article

Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.

scientific article

Diaphorobacter oryzae sp. nov., isolated from a thiosulfate-oxidizing enrichment culture

scientific article

Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea

scientific article published on 26 August 2019

Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor

scientific article

Draconibacterium filum sp. nov., a new species of the genus of Draconibacterium from sediment of the east coast of the Korean Peninsula

scientific article

Draft Genome Sequence of "Candidatus Izimaplasma sp." Strain ZiA1, Obtained from a Toluene-Degrading and Iron-Reducing Enrichment Culture

scientific article published on 30 August 2018

Draft Genome Sequence of an Ammonia-Oxidizing Archaeon, “Candidatus Nitrosopumilus koreensis” AR1, from Marine Sediment ⬇️

scientific article published on December 1, 2012

Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle.

scientific article

Draft genome sequence of an aromatic compound-degrading bacterium, Desulfobacula sp. TS, belonging to the Deltaproteobacteria

scientific article published on 01 November 2014

Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.

scientific article

Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil

scientific article

Erratum to: Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt

scientific article published on 01 August 2015

Evaluation of a fosmid-clone-based microarray for comparative analysis of swine fecal metagenomes

scientific article published on 21 July 2012

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons

scientific article published on 28 August 2019

Feeding by heterotrophic flagellates on marine archaea

scientific article published in 2022

Flavobacterium ahnfeltiae sp. nov., a new marine polysaccharide-degrading bacterium isolated from a Pacific red alga.

scientific article

Flavobacterium chungbukense sp. nov., isolated from soil ⬇️

scientific article published on December 24, 2010

Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes

scientific article

Genome Sequence of an Ammonia-Oxidizing Soil Archaeon, “Candidatus Nitrosoarchaeum koreensis” MY1 ⬇️

scientific article published on October 1, 2011

Genome-wide transcriptomic analysis of BR-deficient Micro-Tom reveals correlations between drought stress tolerance and brassinosteroid signaling in tomato

scientific article published on 27 April 2018

Genomes of two new ammonia-oxidizing archaea enriched from deep marine sediments

scientific article

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils

scientific article published on 27 August 2018

Genomic and Physiological Properties of a Facultative Methane-Oxidizing Bacterial Strain of Methylocystis sp. from a Wetland

scientific article published on 02 November 2020

Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya

scientific article published in 2019

Geosporobacter ferrireducens sp. nov., an anaerobic iron-reducing bacterium isolated from an oil-contaminated site

scientific article

Glaciecola agarilytica sp. nov., an agar-digesting marine bacterium from the East Sea, Korea

scientific article

Halapricum salinum gen. nov., sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt.

scientific article

Halobellus rufus sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt

scientific article published on 9 March 2014

Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment

scientific article

Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.

scientific article published on 15 March 2014

Halomonas aestuarii sp. nov., a moderately halophilic bacterium isolated from a tidal flat

scientific article

Halorubrum halophilum sp. nov., an extremely halophilic archaeon isolated from a salt-fermented seafood.

scientific article

Hoeflea halophila sp. nov., a novel bacterium isolated from marine sediment of the East Sea, Korea ⬇️

scientific article published on January 12, 2013

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea

scientific article

Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste.

scientific article

Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications

scientific article

Indications for enzymatic denitrification to N2O at low pH in an ammonia-oxidizing archaeon

scientific article published on 21 June 2019

Influence of deglaciation on microbial communities in marine sediments off the coast of Svalbard, Arctic Circle

scientific article

Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil

scientific article (publication date: October 2012)

Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome

scientific article published on 15 September 2017

Isolation of uncultivated anaerobic thermophiles from compost by supplementing cell extract of Geobacillus toebii in enrichment culture medium

scientific article published on 22 July 2005

Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge

scientific article

Isotopic signatures of N2O produced by ammonia-oxidizing archaea from soils

scientific article

Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea.

scientific article

Ketobacter alkanivorans gen. nov., sp. nov., an n-alkane-degrading bacterium isolated from seawater

article published in 2018

Kiloniella antarctica sp. nov., isolated from a polynya of Amundsen Sea in Western Antarctic Sea.

scientific article

Leeuwenhoekiella polynyae sp. nov., isolated from a polynya in western Antarctica

scientific article

Litorimonas cladophorae sp. nov., a new alphaproteobacterium isolated from the Pacific green alga Cladophora stimpsoni, and emended descriptions of the genus Litorimonas and Litorimonas taeaensis

scientific article

Marinobacter goseongensis sp. nov., from seawater

scientific article

Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment

scientific article

Marinobacterium maritimum sp. nov., a marine bacterium isolated from Arctic sediment

scientific article

Marinoscillum luteum sp. nov., isolated from marine sediment

scientific article

Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis

scientific article published on 10 October 2013

Metagenome microarray for screening of fosmid clones containing specific genes

scientific article

Metagenomic assessment of a sulfur-oxidizing enrichment culture derived from marine sediment ⬇️

scientific article published on January 9, 2011

Methanomethylovorans uponensis sp. nov., a methylotrophic methanogen isolated from wetland sediment.

scientific article

Methylococcus geothermalis sp. nov., a methanotroph isolated from a geothermal field in the Republic of Korea

scientific article published on 10 September 2020

Microeukaryotic diversity in marine environments, an analysis of surface layer sediments from the East Sea.

scientific article published on June 2008

Molecular analysis of spatial variation of iron-reducing bacteria in riverine alluvial aquifers of the Mankyeong River

scientific article

Molecular analysis of the diversity of the sulfide : quinone reductase (sqr) gene in sediment environments

scientific article published in October 2008

Natronomonas gomsonensis sp. nov., isolated from a solar saltern

scientific article

Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil

scientific article published in 2018

Oceanisphaera donghaensis sp. nov., a halophilic bacterium from the East Sea, Korea.

scientific article

Oncogenic N-Ras Stimulates SRF-Mediated Transactivation via H3 Acetylation at Lysine 9.

scientific article published on 3 January 2018

Planococcus donghaensis sp. nov., a starch-degrading bacterium isolated from the East Sea, South Korea

scientific article

Plant growth-promoting archaea trigger induced systemic resistance in Arabidopsis thaliana against Pectobacterium carotovorum and Pseudomonas syringae

scientific article published on 21 January 2019

Proposed minimal standards for description of methanogenic archaea ⬇️

scientific article published on 25 April 2023

Pseudozyma jejuensis sp. nov., a novel cutinolytic ustilaginomycetous yeast species that is able to degrade plastic waste

scientific article

Pyrosequencing analysis of a bacterial community associated with lava-formed soil from the Gotjawal forest in Jeju, Korea

scientific article

Quantification of Complete Ammonia Oxidizing (Comammox) Bacteria Clades and Strict Nitrite Oxidizers in Nitrospira Using Newly Designed Primers

scientific article published on 21 August 2020

Reductive dehalogenation of brominated phenolic compounds by microorganisms associated with the marine sponge Aplysina aerophoba

scientific article

Reichenbachiella faecimaris sp. nov., isolated from a tidal flat, and emended descriptions of the genus Reichenbachiella and Reichenbachiella agariperforans ⬇️

scientific article published on September 17, 2010

Relationship between genome similarity and DNA-DNA hybridization among closely related bacteria

scientific article published in June 2007

Rhodanobacter aciditrophus sp. nov., an acidophilic bacterium isolated from mine wastewater.

scientific article

Roseovarius halotolerans sp. nov., isolated from deep seawater

scientific article

Salinisphaera orenii sp. nov., isolated from a solar saltern ⬇️

scientific article published on October 7, 2011

Shewanella arctica sp. nov., an iron-reducing bacterium isolated from Arctic marine sediment ⬇️

scientific article published on July 1, 2011

Sphingorhabdus pulchriflava sp. nov., isolated from a river

scientific article

Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea

scientific article published on 16 July 2019

Stappia marina sp. nov., a marine bacterium isolated from the Yellow Sea.

scientific article

Sulfur and methane oxidation by a single microorganism

scientific article published in 2022

Surface Plasmon Resonance Aptamer Biosensor for Discriminating Pathogenic Bacteria Vibrio parahaemolyticus

scientific article published in March 2018

The Archaea Community Associated with Lava-Formed Gotjawal Forest Soil in Jeju, Korea

scientific article published in 2014

The characteristics and comparative analysis of methanotrophs reveal genomic insights into Methylomicrobium sp. enriched from marine sediments

scientific article published on 29 May 2018

Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment ⬇️

scientific article published on September 17, 2010

Toxicity and degradation of metal-complexed cyanide by a bacterial consortium under sulfate-reducing conditions

scientific article

Ubiquity and diversity of complete ammonia oxidizers (comammox)

scientific article published on 30 November 2018

Unveiling abundance and distribution of planktonic Bacteria and Archaea in a polynya in Amundsen Sea, Antarctica

scientific article

Verrucomicrobial methanotrophs grow on diverse C3 compounds and use a homolog of particulate methane monooxygenase to oxidize acetone

scientific article published on 22 June 2021

Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes.

scientific article

Winogradskyella litoriviva sp. nov., isolated from coastal seawater

scientific article

Winogradskyella pulchriflava sp. nov., isolated from marine sediment ⬇️

scientific article published on February 15, 2013

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