List of works by Vincent Ranwez

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

scientific article published on 14 November 2015

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

scientific article

Aligning Protein-Coding Nucleotide Sequences with MACSE

scientific article published on 01 January 2021

An information theoretic approach to improve semantic similarity assessments across multiple ontologies

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

scientific article

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

scientific article

Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat

scientific article published on 15 October 2013

Domestication reduces alternative splicing expression variations in sorghum.

scientific article published on 8 September 2017

Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison

scientific article published in PLoS ONE

Efficient selection of branch-specific models of sequence evolution

scientific article published on 2 February 2012

Epistatic determinism of durum wheat resistance to the wheat spindle streak mosaic virus

scientific article

Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

scientific article published on 26 January 2022

Evolutionary tinkering of the expression of PDF1s suggests their joint effect on zinc tolerance and the response to pathogen attack

scientific article published on 11 March 2014

Exploring the space of gene/species reconciliations with transfers

scientific article

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

scientific article

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

scientific article

Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat

scientific article

Impact of recurrent gene duplication on adaptation of plant genomes

scientific article

Improvement of distance-based phylogenetic methods by a local maximum likelihood approach using triplets.

scientific article published in November 2002

Inferring gene duplications, transfers and losses can be done in a discrete framework

scientific article

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

scientific article

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

scientific article

MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

scholarly article by Vincent Ranwez published in October 2018

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

scientific article (publication date: 2011)

Models, algorithms and programs for phylogeny reconciliation

scientific article published on September 2011

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae).

scientific article

Multiple molecular evidences for a living mammalian fossil

scientific article

Origin and Diversity of Plant Receptor-Like Kinases

scientific article published on 18 March 2020

OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

scientific article published in 2019

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals

scientific article published on 9 April 2014

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

scientific article published in 2007

Pervasive hybridizations in the history of wheat relatives

Pervasive hybridizations in the history of wheat relatives

scientific article published on 01 May 2019

PhySIC: a veto supertree method with desirable properties

scientific article published in October 2007

PhySIC_IST: cleaning source trees to infer more informative supertrees

scientific article (publication date: 4 October 2008)

PhyloExplorer: a web server to validate, explore and query phylogenetic trees

scientific article (publication date: 18 May 2009)

Pitfalls in supermatrix phylogenomics

scientific article published on 21 February 2017

Plant Defensin type 1 (PDF1): protein promiscuity and expression variation within the Arabidopsis genus shed light on zinc tolerance acquisition in Arabidopsis halleri.

scientific article published on 19 July 2013

Reconciliation and local gene tree rearrangement can be of mutual profit

scientific article (publication date: 8 April 2013)

Reconciliation-based detection of co-evolving gene families

scientific article

Representing a set of reconciliations in a compact way.

scientific article

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

scientific article

SuperTriplets: a triplet-based supertree approach to phylogenomics

scientific article

Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

scientific article (publication date: 2013)

The Genetic Map Comparator: a user-friendly application to display and compare genetic maps

scientific article published on 10 January 2017

Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

scientific article

USI: a fast and accurate approach for conceptual document annotation.

scientific article

User Centered and Ontology Based Information Retrieval System for Life Sciences ⬇️

User centered and ontology based information retrieval system for life sciences.

scientific article

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