List of works by John K Wiencke

A case-control study of asphalt and tar exposure and lung cancer in minorities

scientific article

A comparison of DNA methylation specific droplet digital PCR (ddPCR) and real time qPCR with flow cytometry in characterizing human T cells in peripheral blood

scientific article

A germline variant in the TP53 polyadenylation signal confers cancer susceptibility

scientific article published on 25 September 2011

A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network

scientific article

A low-frequency variant at 8q24.21 is strongly associated with risk of oligodendroglial tumors and astrocytomas with IDH1 or IDH2 mutation

scientific article published on 26 August 2012

A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry

scientific article

A novel approach to the discovery of survival biomarkers in glioblastoma using a joint analysis of DNA methylation and gene expression.

scientific article

A population-based study of the Arg399Gln polymorphism in X-ray repair cross- complementing group 1 (XRCC1) and risk of pancreatic adenocarcinoma

scientific article published in August 2002

A population-based, case-control study of polymorphisms in carcinogen-metabolizing genes, smoking, and pancreatic adenocarcinoma risk

scientific article published in February 2002

Activation of PI3K/mTOR pathway occurs in most adult low-grade gliomas and predicts patient survival

scientific article

Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C

scientific article published on 09 May 2020

Adult infiltrating gliomas with WHO 2016 integrated diagnosis: additional prognostic roles of ATRX and TERT.

scientific article

Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age

scientific article published on 19 September 2018

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

scientific article published on 14 August 2009

Allergy-related polymorphisms influence glioma status and serum IgE levels

scientific article published in June 2007

Alterations of 9p in squamous cell carcinoma and adenocarcinoma of the lung: association with smoking, TP53, and survival

scientific article published in October 2005

Analysis of 60 reported glioma risk SNPs replicates published GWAS findings but fails to replicate associations from published candidate-gene studies

scientific article published on 31 December 2012

Analysis of High-throughput DNA Methylation Bead Arrays Utilizing Bayesian Genotyping Algorithms

Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers

scientific article published on 03 July 2020

Association Between Telomere Length and Risk of Cancer and Non-Neoplastic Diseases: A Mendelian Randomization Study ⬇️

scientific article published on 23 February 2017

Association study of nicotinic acetylcholine receptor genes identifies a novel lung cancer susceptibility locus near CHRNA1 in African-Americans.

scientific article

Associations between polymorphisms in DNA repair genes and glioblastoma

journal article published in 2009

Associations of high-grade glioma with glioma risk alleles and histories of allergy and smoking

scientific article

Asthma and lung cancer risk: a systematic investigation by the International Lung Cancer Consortium

scientific article

Backtracking RAS mutations in high hyperdiploid childhood acute lymphoblastic leukemia

scientific article

Base excision repair genes and risk of lung cancer among San Francisco Bay Area Latinos and African-Americans

scientific article

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.

scientific article published on 25 June 2013

Breast cancer DNA methylation profiles are associated with tumor size and alcohol and folate intake.

scientific article

CD8+ T-cell infiltrate in newly diagnosed glioblastoma is associated with long-term survival.

scientific article

CDKN2A loss is associated with shortened overall survival in lower-grade (World Health Organization Grades II-III) astrocytomas

scientific article

CHRNA5 risk variant predicts delayed smoking cessation and earlier lung cancer diagnosis--a meta-analysis

scientific article published in May 2015

COMP-05. EVALUATION OF A DEEP LEARNING ARCHITECTURE FOR MRI PREDICTION OF IDH, 1p19q AND TERT IN GLIOMA PATIENTS

scholarly article by Panagiotis Korfiatis et al published 5 November 2018 in Neuro-Oncology

CYP1A1 variants and smoking-related lung cancer in San Francisco Bay area Latinos and African Americans

scientific article published in January 2005

CYP1A1/2 haplotypes and lung cancer and assessment of confounding by population stratification

scientific article

Cancer. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer.

scientific article published on 14 May 2015

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective.

scientific article

Characterization of large structural genetic mosaicism in human autosome

journal article published in 2015

Chemokine polymorphisms and lymphoma: a pooled analysis

scientific article

Cigarette smoking associated with lung adenocarcinoma in situ in a large case-control study (SFBALCS).

scientific article

Circulating levels of the innate and humoral immune regulators CD14 and CD23 are associated with adult glioma

scientific article published on 18 August 2010

Comparison of statistical methods for estimating genetic admixture in a lung cancer study of African Americans and Latinos

scientific article published on 12 September 2008

Copy number variation has little impact on bead-array-based measures of DNA methylation.

scientific article published on 19 June 2009

Cross-Cancer Pleiotropic Associations with Lung Cancer Risk in African Americans

scientific article published on 20 March 2019

DNA Methylation in Whole Blood: Uses and Challenges.

scientific article published on June 2015

DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio: An Epigenetic Tool to Explore Cancer Inflammation and Outcomes.

scientific article

DNA hypermethylation profiles associated with glioma subtypes and EZH2 and IGFBP2 mRNA expression.

scientific article

DNA methylation arrays as surrogate measures of cell mixture distribution

scientific article

DNA methylation profiles delineate etiologic heterogeneity and clinically important subgroups of bladder cancer ⬇️

scientific article published on August 28, 2010

DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma

scientific article

DNA quantification of whole genome amplified samples for genotyping on a multiplexed bead array platform

scientific article

DNA repair polymorphisms XRCC1 and MGMT and risk of adult gliomas

scientific article published on 24 September 2007

Decreased NK cells in patients with head and neck cancer determined in archival DNA.

scientific article

Detectable clonal mosaicism and its relationship to aging and cancer

journal article published in 2012

Differentiation of lung adenocarcinoma, pleural mesothelioma, and nonmalignant pulmonary tissues using DNA methylation profiles

scientific article

Distinct germ line polymorphisms underlie glioma morphologic heterogeneity

scientific article

ED-36INHERITED VARIANTS NEAR TERC AND TERT ARE ASSOCIATED WITH LONGER TELOMERES AND INCREASED GLIOMA RISK: GENOME-WIDE ASSOCIATION RESULTS FROM THE UCSF ADULT GLIOMA STUDY AND THE ENGAGE CONSORTIUM TELOMERE GROUP.

scientific article published in November 2014

EPID-12. USING GERMLINE VARIANTS TO PREDICT GLIOMA RISK AND IDENTIFY GLIOMA SUBTYPE PRE-OPERATIVELY

EPID-23UNDERSTANDING INHERITED GENETIC RISK OF ADULT GLIOMA - A REVIEW.

scientific article

EPID-31ATRX AND TERT ASSAYS PROVIDE NON-REDUNDANT INFORMATION IN ADULT GLIOMA PATIENTS: INCORPORATING TELOMERE MARKERS INTO NEUROPATHOLOGY PRACTICE.

scientific article

EPID-32PROTEIN-SPECIFIC ANTIBODY RESPONSES TO VARICELLA AND CYTOMEGALOVIRUS IN GLIOMA PATIENTS COMPARED TO CONTROLS.

scientific article

ERCC1 and ERCC2 polymorphisms and adult glioma

scientific article published on October 2005

Enlarged leukocyte referent libraries can explain additional variance in blood-based epigenome-wide association studies

scientific article

Epigenetic biomarkers of T-cells in human glioma.

scientific article

Epigenetic profiles distinguish pleural mesothelioma from normal pleura and predict lung asbestos burden and clinical outcome

scientific article

Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma

scientific article published on 06 January 2009

Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures.

scientific article

Ethnic difference in daycare attendance, early infections, and risk of childhood acute lymphoblastic leukemia

scientific article

Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome

journal article published in 2016

Fetal growth and body size genes and risk of childhood acute lymphoblastic leukemia

scientific article

Fine mapping of chromosome 15q25.1 lung cancer susceptibility in African-Americans

scientific article

Fine-mapping of the 5p15.33, 6p22.1-p21.31, and 15q25.1 regions identifies functional and histology-specific lung cancer susceptibility loci in African-Americans

scientific article published on 5 December 2012

GE-09TERT PROMOTER MUTATION, IDH MUTATION AND 1p/19q CODELETION DEFINE FIVE GLIOMA MOLECULAR GROUPS WITH SPECIFIC CLINICAL CHARACTERISTICS AND GERMLINE VARIANT ASSOCIATIONS.

scientific article

GENE-47. EVALUATING GLIOMA RISK ASSOCIATED WITH EXTENT OF EUROPEAN ADMIXTURE IN AFRICAN-AMERICANS AND LATINOS

article

GENE-53. SEX-SPECIFIC GENE AND PATHWAY MODELING OF INHERITED GLIOMA RISK

article

GENO-07A MECHANISM OF MUTANT TERT PROMOTER ACTIVATION SHARED ACROSS CANCER TYPES.

scientific article

GENO-29MUTATIONAL DIVERSITY UNDERLYING TELOMERE MAINTENANCE MECHANISMS IN AN APPRECIABLE FRACTION OF ADULT GLIOMAS.

scientific article

Gene by Environment Investigation of Incident Lung Cancer Risk in African-Americans

scientific article published on 11 January 2016

Genetic Risk Can Be Decreased: Quitting Smoking Decreases and Delays Lung Cancer for Smokers With High and Low CHRNA5 Risk Genotypes - A Meta-Analysis

scientific article published on 10 August 2016

Genetic Variation Associated with Longer Telomere Length Increases Risk of Chronic Lymphocytic Leukemia

scientific article published on 13 May 2016

Genetic and epigenetic somatic alterations in head and neck squamous cell carcinomas are globally coordinated but not locally targeted.

scientific article

Genetic and molecular epidemiology of adult diffuse glioma

scientific article published on 21 June 2019

Genetic polymorphisms in MTHFR 677 and 1298, GSTM1 and T1, and metabolism of arsenic

journal article published in 2007

Genetic polymorphisms in adaptive immunity genes and childhood acute lymphoblastic leukemia

scientific article published on 17 August 2010

Genetic variants in telomerase-related genes are associated with an older age at diagnosis in glioma patients: evidence for distinct pathways of gliomagenesis

scientific article published on 03 June 2013

Genetic variants in the folate pathway and risk of childhood acute lymphoblastic leukemia

scientific article published on 12 July 2011

Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population

scientific article

Genome-wide association study of glioma and meta-analysis

journal article published in 2012

Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors

scientific article published on 27 March 2017

Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture

scientific article

Germline Genetic Variants and Lung Cancer Survival in African Americans

scientific article published on 15 June 2017

Germline polymorphisms in myeloid-associated genes are not associated with survival in glioma patients.

scientific article

Glioma Groups Based on 1p/19q, IDH, and TERT Promoter Mutations in Tumors

scientific article published on 10 June 2015

Glioma risk associated with extent of estimated European genetic ancestry in African Americans and Hispanics

scientific article published on 22 April 2019

Glutathione-S-transferase variants and adult glioma.

scientific article published in March 2004

HLA-DP genetic variation, proxies for early life immune modulation and childhood acute lymphoblastic leukemia risk

scientific article

Haplotypes of DNA repair and cell cycle control genes, X-ray exposure, and risk of childhood acute lymphoblastic leukemia

scientific article published on 11 October 2011

History of Parvovirus B19 infection is associated with a DNA methylation signature in childhood acute lymphoblastic leukemia ⬇️

scientific article published on December 2011

History of allergies among adults with glioma and controls

scientific article published on April 2002

History of chickenpox and shingles and prevalence of antibodies to varicella-zoster virus and three other herpesviruses among adults with glioma and controls

scientific article

Homozygous deletion of p16INK4a and tobacco carcinogen exposure in nonsmall cell lung cancer

article published in 2006

Hypermethylation of RASSF1A and BLU tumor suppressor genes in non-small cell lung cancer: implications for tobacco smoking during adolescence

scientific article

Hypermethylation of the 5' CpG island of the FHIT gene is associated with hyperdiploid and translocation-negative subtypes of pediatric leukemia

scientific article published in March 2004

IMMU-07. IMMUNE PROFILES IN THE SAN FRANCISCO ADULT GLIOMA STUDY (AGS) USING IMMUNOMETHYLOMICS

Identification of methylated genes associated with aggressive bladder cancer

scientific article

IgE, allergy, and risk of glioma: update from the San Francisco Bay Area Adult Glioma Study in the temozolomide era.

scientific article

Immune factors preceding diagnosis of glioma: a Prostate Lung Colorectal Ovarian Cancer Screening Trial nested case-control study

scientific article published on 01 May 2019

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).

scientific article

Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33

journal article published in 2014

In utero origin of t(8;21) AML1-ETO translocations in childhood acute myeloid leukemia

scientific article published in May 2002

Increased risk of lung cancer in individuals with a family history of the disease: a pooled analysis from the International Lung Cancer Consortium

scientific article

Inherited variant on chromosome 11q23 increases susceptibility to IDH-mutated but not IDH-normal gliomas regardless of grade or histology

scientific article published on 29 January 2013

Inherited variation in immune genes and pathways and glioblastoma risk

scientific article

Integrated profiling reveals a global correlation between epigenetic and genetic alterations in mesothelioma

scientific article published on 29 June 2010

Interaction of allergy history and antibodies to specific varicella-zoster virus proteins on glioma risk

scientific article published on 31 October 2013

International Lung Cancer Consortium: pooled analysis of sequence variants in DNA repair and cell cycle pathways

scientific article

Investigation of genetic polymorphisms and smoking in a bladder cancer case-control study in Argentina

scientific article

Key epigenetic changes associated with lung cancer development: results from dense methylation array profiling

scientific article

Lack of increased genetic damage in 1,3-butadiene-exposed Chinese workers studied in relation to EPHX1 and GST genotypes

scientific article

Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients

scientific article

Leveraging ethnic group incidence variation to investigate genetic susceptibility to glioma: a novel candidate SNP approach

scientific article

Longer genotypically-estimated leukocyte telomere length is associated with increased adult glioma risk

scientific article published on 4 December 2015

Loss of Heterozygosity of Chromosome 3p21 Is Associated with MutantTP53and Better Patient Survival in Non–Small-Cell Lung Cancer

scientific article published on 01 December 2004

MDR1 gene variants, indoor insecticide exposure, and the risk of childhood acute lymphoblastic leukemia

scientific article published on June 2007

MUTATION-BASED MOLECULAR GLIOMA CLASSIFICATION: PREVALENCE AND ASSOCIATION WITH GERMLINE RISK SNPS.

scientific article published in July 2014

Matching on Race and Ethnicity in Case-Control Studies as a Means of Control for Population Stratification

scientific article published on September 2011

Methylation of the PTEN promoter defines low-grade gliomas and secondary glioblastoma

scientific article published on 15 May 2007

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions

scientific article

Molecular biomarkers for the study of childhood leukemia

scientific article

Molecular features of adult glioma associated with patient race/ethnicity, age, and a polymorphism in O6-methylguanine-DNA-methyltransferase.

scientific article published in July 2005

Non-additive and epistatic effects of HLA polymorphisms contributing to risk of adult glioma.

scientific article published on 18 July 2017

Nonsynonymous coding single-nucleotide polymorphisms spanning the genome in relation to glioblastoma survival and age at diagnosis

scientific article published in January 2007

Nucleotide excision repair genes and risk of lung cancer among San Francisco Bay Area Latinos and African Americans

scientific article

On the use of biomarkers for environmental health research

scientific article published in June 2004

PS1-8: A Prospective Study of Breast Cancer Survivorship in Kaiser Permanente Northern California: The Pathways Study

scientific article published in September 2013

PTEN expression in non–small-cell lung cancer: evaluating its relation to tumor characteristics, allelic loss, and epigenetic alteration

article

PTEN promoter methylation and activation of the PI3K/Akt/mTOR pathway in pediatric gliomas and influence on clinical outcome

scientific article

PTPRG inhibition by DNA methylation and cooperation with RAS gene activation in childhood acute lymphoblastic leukemia

scientific article published on 19 February 2014

Pathway analysis of single-nucleotide polymorphisms potentially associated with glioblastoma multiforme susceptibility using random forests.

scientific article published in June 2008

Peripheral blood DNA methylation profiles are indicative of head and neck squamous cell carcinoma: an epigenome-wide association study

scientific article

Peripheral blood immune cell methylation profiles are associated with nonhematopoietic cancers

scientific article

Polymorphisms of LIG4, BTBD2, HMGA2, and RTEL1 genes involved in the double-strand break repair pathway predict glioblastoma survival

scientific article

Polyphenol associated-DNA adducts in lung and blood mononuclear cells from lung cancer patients

scientific article published on 20 June 2005

Population- and community-based recruitment of African Americans and Latinos: the San Francisco Bay Area Lung Cancer Study

scientific article

Positive and negative associations of human leukocyte antigen variants with the onset and prognosis of adult glioblastoma multiforme.

scientific article published in August 2005

Previous lung diseases and lung cancer risk: a pooled analysis from the International Lung Cancer Consortium

scientific article

Pyruvate kinase M2 expression, but not pyruvate kinase activity, is up-regulated in a grade-specific manner in human glioma

scientific article

Quantitative reconstruction of leukocyte subsets using DNA methylation

scientific article

Reduced immunoglobulin E and allergy among adults with glioma compared with controls

scientific article published in November 2004

Replication of lung cancer susceptibility loci at chromosomes 15q25, 5p15, and 6p21: a pooled analysis from the International Lung Cancer Consortium

scientific article

Risk of squamous cell carcinoma of the skin in relation to IgE: a nested case-control study

scientific article published on 23 September 2011

SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) ASSOCIATED WITH GLIOMA SURVIVAL.

scientific article published in July 2014

SNP association mapping across the extended major histocompatibility complex and risk of B-cell precursor acute lymphoblastic leukemia in children

scientific article

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system

scientific article

SSBP2 variants are associated with survival in glioblastoma patients

scientific journal article

Serum IgE, tumor epidermal growth factor receptor expression, and inherited polymorphisms associated with glioma survival

scientific article

Serum macrophage-derived chemokine/CCL22 levels are associated with glioma risk, CD4 T cell lymphopenia and survival time

scientific article published on 2 February 2015

Sex-specific gene and pathway modeling of inherited glioma risk

article

Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.

scientific article published on 9 May 2018

Smoking and Genetic Risk Variation Across Populations of European, Asian, and African American Ancestry-A Meta-Analysis of Chromosome 15q25

article

Smoking and genetic risk variation across populations of European, Asian, and African American ancestry--a meta-analysis of chromosome 15q25.

scientific article

Socioeconomic status and lung cancer: unraveling the contribution of genetic admixture

scientific article published on 15 August 2013

Survival and low-grade glioma: the emergence of genetic information

scientific article

Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

scientific article published on 27 August 2019

TEL-AML1 regulation of survivin and apoptosis via miRNA-494 and miRNA-320a

scientific article published on 31 August 2010

TELOMERE LENGTH VARIANTS ARE ASSOCIATED WITH HIGH-GRADE GLIOMA RISK: IDENTIFICATION OF A NOVEL GLIOMA RISK LOCUS BY GENOME-WIDE ASSOCIATION STUDY.

scientific article published in July 2014

Teen smoking, field cancerization, and a "critical period" hypothesis for lung cancer susceptibility

scientific article

Telomere maintenance and the etiology of adult glioma

scientific article

The C3435T polymorphism of MDR1 and susceptibility to adult glioma

scientific article published on 8 June 2005

The DNA methylation profile of activated human natural killer cells.

scientific article published on 11 March 2016

The Pathways Study: a prospective study of breast cancer survivorship within Kaiser Permanente Northern California

scientific article published on 14 May 2008

The influence of aging, environmental exposures and local sequence features on the variation of DNA methylation in blood

scientific article

The landscape of recombination in African Americans

scientific article

The race associated allele of Semaphorin 3B (SEMA3B) T415I and its role in lung cancer in African-Americans and Latino-Americans

scientific article

Tracing human stem cell lineage during development using DNA methylation

scientific article published on 02 August 2018

Understanding inherited genetic risk of adult glioma - a review

scientific article

Understanding the Role of the Immune System in the Development of Cancer: New Opportunities for Population-Based Research

scientific article published on 22 September 2015

Using germline variants to estimate glioma and subtype risks

scientific article published on 01 March 2019

Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility

scientific article

Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk

scientific article

Variation in xenobiotic transport and metabolism genes, household chemical exposures, and risk of childhood acute lymphoblastic leukemia

scientific article

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