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List of works by Detmer Sipkema

Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam.

scientific article

Associated bacteria of (Chlorophyta)

scientific article published on 27 March 2019

Bioactivity Screening and Gene-Trait Matching across Marine Sponge-Associated Bacteria

scientific article published on 31 January 2021

Biodiversity, environmental drivers, and sustainability of the global deep-sea sponge microbiome

scientific article published in 2022

Biological characterisation of Haliclona (?gellius) sp.: sponge and associated microorganisms

scientific article published on 27 May 2009

Bioprospecting Sponge-Associated Microbes for Antimicrobial Compounds

scientific article

Breakthrough in Marine Invertebrate Cell Culture: Sponge Cells Divide Rapidly in Improved Nutrient Medium

scientific article published on 21 November 2019

Candidatus Nemesobacterales is a sponge-specific clade of the candidate phylum Desulfobacterota adapted to a symbiotic lifestyle

scientific article published in 2023

Coexistence of poribacterial phylotypes among geographically widespread and phylogenetically divergent sponge hosts

scientific article

Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

scientific article published on 20 August 2020

Comparative genomics highlights symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio

scientific article published on 8 January 2018

Correction to: Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges

correction of a scholarly article

Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients

scientific article published on 19 February 2020

Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths

scientific article published on 11 October 2019

Cultivation of sponges, sponge cells and symbionts: achievements and future prospects.

scientific article published on January 2012

Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats

scientific article

Culture-dependent and independent approaches for identifying novel halogenases encoded by Crambe crambe (marine sponge) microbiota

scientific article (publication date: 27 September 2013)

Different co-occurring bacteria enhance or decrease the growth of the microalga Nannochloropsis sp. CCAP211/78

scientific article published on 08 March 2021

Distribution and diversity of ‘Tectomicrobia’, a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites

scientific article published in 2023

Diversity of tryptophan halogenases in sponges of the genus Aplysina

scientific article published on 01 August 2019

Erratum to: The sponge microbiome project

scientific article published on 01 December 2018

Exploration and exploitation of the environment for novel specialized metabolites.

scientific article published on 14 February 2018

Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics

scientific article published in Scientific Reports

Feed, Microbiota, and Gut Immunity: Using the Zebrafish Model to Understand Fish Health

scientific article published on 05 February 2020

Fungi found in Mediterranean and North Sea sponges: how specific are they?

scientific article

Genetic algorithm as an optimization tool for the development of sponge cell culture media

article

Geochemical Parameters and Reductive Dechlorination Determine Aerobic Cometabolic vs Aerobic Metabolic Vinyl Chloride Biodegradation at Oxic/Anoxic Interface of Hyporheic Zones

scientific article published on 22 December 2016

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera

scientific article published on 20 December 2017

Host-specific microbial communities in three sympatric North Sea sponges

scientific article

Hypothesized kinetic models for describing the growth of globular and encrusting demosponges

scientific article published in January 2006

Impact of a novel protein meal on the gastrointestinal microbiota and the host transcriptome of larval zebrafish Danio rerio

scientific article published on 30 April 2015

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

scientific article published on 26 November 2015

Large-scale production of pharmaceuticals by marine sponges: sea, cell, or synthesis?

scientific article published in April 2005

Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products

scientific article published on 26 April 2019

Marine biotechnology: diving deeper for drugs

scientific article published on 6 September 2016

Marine sponges as pharmacy

scientific article

Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes

scientific article published on 02 May 2020

Microbial Synthesis and Transformation of Inorganic and Organic Chlorine Compounds

scientific article published on 12 December 2018

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

scientific article published on 8 July 2015

Multiple approaches to enhance the cultivability of bacteria associated with the marine sponge Haliclona (gellius) sp.

scientific article

NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes

scientific article published on 22 July 2016

Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges

scientific article

Organohalide-respiring Desulfoluna species isolated from marine environments

scientific article published on 02 January 2020

Phylogeny resolved, metabolism revealed: functional radiation within a widespread and divergent clade of sponge symbionts

scientific article published on 03 October 2020

Probiotic legacy effects on gut microbial assembly in tilapia larvae

scientific article published on 27 September 2016

Realizing the promises of marine biotechnology

scientific article published on July 2003

Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges

scientific article published on 10 July 2017

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

scientific article published on 2 March 2015

Spatial distribution of bacteria associated with the marine sponge Tethya californiana

scientific article

Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes

scientific article

Sponge-cell culture? A molecular identification method for sponge cells

scientific article

Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage-specific microbial signatures.

scientific article published on 13 June 2018

The colonization dynamics of the gut microbiota in tilapia larvae

scientific article

The effect of the algal microbiome on industrial production of microalgae.

scientific article

The impact of rearing environment on the development of gut microbiota in tilapia larvae

scientific article published on 11 December 2015

The life and death of sponge cells

scientific article published in February 2004

The multi-omics promise in context: from sequence to microbial isolate

scientific article (publication date: 31 May 2017)

The sponge microbiome project

scientific article published on October 2017

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