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List of works by Sandra L Rodriguez-Zas

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome

scientific article

A python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites

scientific article

Accurate assignment of significance to neuropeptide identifications using Monte Carlo k-permuted decoy databases

scientific article

An analysis of survey data by size of the breeding herd for the reproductive management practices of North American sow farms ⬇️

scientific article published on October 24, 2012

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states ⬇️

scientific article published on September 29, 2011

Bivariate genome-wide association analysis of the growth and intake components of feed efficiency

scientific article published on 29 October 2013

Brain gene expression changes elicited by peripheral vitellogenin knockdown in the honey bee ⬇️

scientific article published on July 24, 2013

Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior

scientific article published in PLoS ONE

Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival

scientific article

Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing

scientific article published on 19 January 2016

Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica).

scientific article

Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq

scientific article published on 27 January 2016

Differential Transcriptome Networks between IDO1-Knockout and Wild-Type Mice in Brain Microglia and Macrophages

scientific article

Discrete molecular states in the brain accompany changing responses to a vocal signal

scientific article

Effects of maternal immune activation in porcine transcript isoforms of neuropeptide and receptor genes

scientific article published on 01 March 2021

Enhanced Understanding of Molecular Interactions and Function Underlying Pain Processes Through Networks of Transcript Isoforms, Genes, and Gene Families

scientific article published on 18 February 2021

Fine-mapping of a QTL influencing pork tenderness on porcine chromosome 2.

scientific article

First survey and functional annotation of prohormone and convertase genes in the pig.

scientific article

Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development

scientific article

Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling as potential mechanism for the negative relationships between immune [...]

scientific article

Genomic dissection of behavioral maturation in the honey bee.

scholarly article

Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning

scientific article

Identification and characterization of alternative exon usage linked glioblastoma multiforme survival ⬇️

scientific article published on December 4, 2012

Identification and ranking of genetic and laboratory environment factors influencing a behavioral trait, thermal nociception, via computational analysis of a large data archive

scientific article

In Silico Mapping of Mouse Quantitative Trait Loci ⬇️

scientific article published on December 21, 2001

Inference of gene pathways using mixture Bayesian networks

scientific article

Influence of hormone supplementation to extended semen on artificial insemination, uterine contractions, establishment of a sperm reservoir, and fertility in swine1,2 ⬇️

scientific article published on April 1, 2003

Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum

scientific article

Mammary gene expression profiles during an intramammary challenge reveal potential mechanisms linking negative energy balance with impaired immune response

scientific article

Maternal Plane of Nutrition during Late Gestation and Weaning Age Alter Angus × Simmental Offspring Longissimus Muscle Transcriptome and Intramuscular Fat.

scientific article

Mechanisms of stable lipid loss in a social insect ⬇️

scientific article published on November 15, 2011

Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees

scientific article

Microarray analysis of natural socially regulated plasticity in circadian rhythms of honey bees

scientific article published in February 2012

Microglia Transcriptome Changes in a Model of Depressive Behavior after Immune Challenge

scientific article

Modulatory communication signal performance is associated with a distinct neurogenomic state in honey bees

scientific article

NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides

scientific article

Neurogenomic signatures of spatiotemporal memories in time-trained forager honey bees

scientific article

New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior

scientific article

Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle

scientific article

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

scientific article published on 25 May 2019

Semiparametric approach to characterize unique gene expression trajectories across time

scientific article published on 13 September 2006

Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

scientific article

Space allowance for gestating sows in pens: Behavior and immunity1 ⬇️

scientific article published on 07 August 2012

Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice

scientific article

Terpenoid Backbone Biosynthesis among Pig Hippocampal Pathways Impacted by Stressors

scientific article published on 02 May 2022

The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution

scientific article

The Transcription Factor Ultraspiracle Influences Honey Bee Social Behavior and Behavior-Related Gene Expression ⬇️

scientific article published on March 29, 2012

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The zebra finch neuropeptidome: prediction, detection and expression

scientific article

Trans-10,cis12-Conjugated Linoleic Acid-Induced Milk Fat Depression Is Associated with Inhibition of PPARγSignaling and Inflammation in Murine Mammary Tissue ⬇️

scientific article published on May 14, 2013

Transcription factor-microRNA-target gene networks associated with ovarian cancer survival and recurrence

scientific article

Transcriptomic profiling of central nervous system regions in three species of honey bee during dance communication behavior

scientific article

Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation

scientific article

Transferase activity function and system development process are critical in cattle embryo development

scientific article

Voluntary wheel running reverses age-induced changes in hippocampal gene expression

scientific article

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