List of works - Samira Fafi-Kremer

45 years after the discovery of human polyomaviruses BK and JC: Time to speed up the understanding of associated diseases and treatment approaches

scientific article published on November 2016

A new hot spot for tick-borne encephalitis (TBE): A marked increase of TBE cases in France in 2016.

scientific article published on 28 September 2017

A prospective follow-up of Epstein-Barr virus LMP1 genotypes in saliva and blood during infectious mononucleosis.

scientific article

Adaptive immunity to hepatitis C virus

scientific article

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

scientific article published on 18 October 2018

Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma

scientific article published on 25 October 2014

Antiretroviral-treated HIV-1 patients can harbour resistant viruses in CSF despite an undetectable viral load in plasma

scientific article published on 2 May 2017

Autoantibodies neutralizing type I IFNs underlie severe tick-borne encephalitis in ∼10% of patients

scientific article published in 2024

BK-virus and pathophysiology of associated diseases

scientific article published on 01 February 2019

Brain MRI Findings in Severe COVID-19: A Retrospective Observational Study

scientific article published on 16 June 2020

Cerebrospinal fluid features in COVID-19 patients with neurologic manifestations: correlation with brain MRI findings in 58 patients

scientific article published on 29 November 2020

Challenges for HCV vaccine development in HIV-HCV coinfection

scientific article published on July 2012

Clinical and virological follow-up of a cohort of 76 COVID-19 older hospitalized adults

scientific article published on 25 December 2020

Clinical phenotypes and outcomes associated with SARS-CoV-2 variant Omicron in critically ill French patients with COVID-19

scientific article published in 2022

Comparison of six commercial tick-borne encephalitis IgM and IgG ELISA kits and the molecular characterization of their antigenic design

scientific article published on 22 December 2017

Congenital Lymphocytic Choriomeningitis Virus: A Case of Prenatal Diagnosis.

scientific article published on 29 August 2017

Coronavirus disease 2019 3 months after hematopoietic stem cell transplant: A pediatric case report

scientific article published on 06 July 2020

Development of hepatitis C virus vaccines: challenges and progress.

scientific article

Distribution and reduction magnitude of HIV-DNA burden in CD4+ T cell subsets depend on art initiation timing.

scientific article published on 8 February 2018

Dolutegravir reshapes the genetic diversity of HIV-1 reservoirs.

scientific article published on 13 December 2017

Drug resistance and tropism as markers of the dynamics of HIV-1 DNA quasispecies in blood cells of heavily pretreated patients who achieved sustained virological suppression

scientific article published on 16 December 2015

EBV limbic encephalitis after allogenic hematopoietic stem cell transplantation.

scientific article

Early evolution of hepatitis C virus (HCV) quasispecies after liver transplant for HCV-related disease

scientific article published on 29 June 2007

Efficacy and safety of switching to raltegravir plus atazanavir dual therapy in pretreated HIV-1-infected patients over 144 weeks: a cohort study

scientific article published on 17 September 2014

Epstein-Barr virus infection and clinical outcome in breast cancer patients correlate with immune cell TNF-α/IFN-γ response

scientific article

Epstein-Barr virus load in whole blood correlates with HIV surrogate markers and lymphoma: a French national cross-sectional study

scientific article published in April 2009

Evaluation of Humoral Immunity to SARS-CoV-2: Diagnostic Value of a New Multiplex Addressable Laser Bead Immunoassay

scientific article published on 26 November 2020

Evaluation of the Epstein-Barr virus R-gene quantification kit in whole blood with different extraction methods and PCR platforms

scientific article published on 28 December 2007

Evaluation of the performance of SARS-CoV-2 serological tools and their positioning in COVID-19 diagnostic strategies

scientific article published on 21 August 2020

First case of COVID-19 in a kidney transplant recipient treated with belatacept

scientific article published on 13 April 2020

Frequent compartmentalization of hepatitis C virus with leukocyte-related amino acids in the setting of liver transplantation.

scientific article published on December 2008

HIV-1 subtype B-infected MSM may have driven the spread of transmitted resistant strains in France in 2007-12: impact on susceptibility to first-line strategies

scientific article published on 26 February 2015

Hepatitis B virus mutations potentially conferring adefovir/tenofovir resistance in treatment-naive patients

scientific article published on February 2009

Hepatitis C virus entry and glucocorticosteroids

scientific article published on 11 August 2010

Hepatitis C virus entry into hepatocytes: molecular mechanisms and targets for antiviral therapies

scientific article

Hepatitis C virus envelope glycoprotein signatures are associated with treatment failure and modulation of viral entry and neutralization.

scientific article published on 18 January 2013

Hepatitis C virus vaccines--progress and perspectives

scientific article published on 07 March 2013

In Vitro and In Vivo Models for the Study of Human Polyomavirus Infection

scientific article

In-depth virological assessment of kidney transplant recipients with COVID-19

scientific article published on 10 August 2020

Inadequate Immune Humoral Response against JC Virus in Progressive Multifocal Leukoencephalopathy Non-Survivors

scientific article published on 02 December 2020

Intrafamilial Exposure to SARS-CoV-2 Associated with Cellular Immune Response without Seroconversion, France

scientific article published on 01 December 2020

Intravenous Immunoglobulin Administration Significantly Increases BKPyV Genotype-Specific Neutralizing Antibody Titers in Kidney Transplant Recipients

scientific article published on 25 July 2019

Intravenous immunoglobulins as a preventive strategy against BK virus viremia and BKV-associated nephropathy in kidney transplant recipients - Results from a proof-of-concept study

scientific article published on 02 August 2020

Letter to the Editor concerning "Cytomegalovirus prevention strategies and the risk of BK polyomavirus viremia and nephropathy"

scientific article published on 06 November 2019

Levels of intracellular HIV-DNA in patients with suppressive antiretroviral therapy

scientific article published on August 2015

Long-term shedding of infectious epstein-barr virus after infectious mononucleosis.

scientific article published on 7 February 2005

Long-term storage and safe retrieval of human papillomavirus DNA using FTA elute cards

scientific article published on 22 December 2015

Microcephaly Caused by Lymphocytic Choriomeningitis Virus

scientific article published on September 2017

Monoclonal anti-claudin 1 antibodies prevent hepatitis C virus infection of primary human hepatocytes

scientific article published on 2 June 2010

Monoclonal anti-envelope antibody AP33 protects humanized mice against a patient-derived hepatitis C virus challenge

scientific article published on 28 December 2015

Mutations that alter use of hepatitis C virus cell entry factors mediate escape from neutralizing antibodies

scientific article published on 10 April 2012

Neuroimaging of Epstein-Barr virus infections in children

scientific article published on 30 January 2008

Neutralizing Antibody-Mediated Response and Risk of BK Virus-Associated Nephropathy.

scientific article published on 17 October 2017

Neutralizing antibodies and pathogenesis of hepatitis C virus infection

scientific article

Neutralizing antibodies in hepatitis C virus infection

scientific article

Novel human SR-BI antibodies prevent infection and dissemination of HCV in vitro and in humanized mice.

scientific article

Peculiar Clinical Presentation of Coxsackievirus B4 Infection: Neonatal Restrictive Cardiomyopathy

scientific article published on April 2017

Performance of the Liaison® XL Murex recHTLV-I/II Immunoassay in the Detection of HTLV-1/2 Antibodies in Serum

scientific article published on May 2017

Persistence of SARS-CoV-2 antibodies in kidney transplant recipients

scientific article published on 28 December 2020

Problem-based learning in laboratory medicine resident education: a satisfaction survey

scientific article published on April 2017

Progressive multifocal leukoencephalopathy: MRI findings in HIV-infected patients are closer to rituximab- than natalizumab-associated PML

scientific article published on 06 November 2020

Quantification of gp350/220 Epstein-Barr virus (EBV) mRNA by real-time reverse transcription-PCR in EBV-associated diseases

scientific article published on October 2004

Rapid and early virological response to chronic hepatitis C treatment with IFN 2b or PEG-IFN 2b plus ribavirin in HIV/HCV co-infected patients

scientific article

Real-time quantitative PCR for assessment of antiviral drug effects against Epstein-Barr virus replication and EBV late mRNA expression

scientific article published on 19 March 2007

Reduced sensitivity of SARS-CoV-2 variant Delta to antibody neutralization

scientific article

Reduced sensitivity of infectious SARS-CoV-2 variant B.1.617.2 to monoclonal antibodies and sera from convalescent and vaccinated individuals

scientific article

SARS-CoV-2 viral dynamics in immunocompromised patients

scientific article published on 13 October 2020

Sequence Variation in Amplification Target Genes and Standards Influences Interlaboratory Comparison of BK Virus DNA Load Measurement.

scientific article

Serologic responses to SARS-CoV-2 infection among hospital staff with mild disease in eastern France

scientific article published on 22 May 2020

Serologic responses to SARS-CoV-2 infection among hospital staff with mild disease in eastern France

scientific article published on 31 July 2020

The Authors Reply

scientific article published on 21 February 2018

Tick-Borne Encephalitis in Auvergne-Rhône-Alpes Region, France, 2017-2018

scientific article published on 01 October 2019

Tick-borne encephalitis virus: molecular determinants of neuropathogenesis of an emerging pathogen

scientific article published on 03 July 2019

Toward standardization of BK virus monitoring: evaluation of the BK virus R-gene kit for quantification of BK viral load in urine, whole-blood, and plasma specimens.

scientific article published on 8 October 2014

Viral entry and escape from antibody-mediated neutralization influence hepatitis C virus reinfection in liver transplantation

scientific article

List of works by Samira Fafi-Kremer

45 years after the discovery of human polyomaviruses BK and JC: Time to speed up the understanding of associated diseases and treatment approaches

A new hot spot for tick-borne encephalitis (TBE): A marked increase of TBE cases in France in 2016.

A prospective follow-up of Epstein-Barr virus LMP1 genotypes in saliva and blood during infectious mononucleosis.

Adaptive immunity to hepatitis C virus

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma

Antiretroviral-treated HIV-1 patients can harbour resistant viruses in CSF despite an undetectable viral load in plasma

Autoantibodies neutralizing type I IFNs underlie severe tick-borne encephalitis in ∼10% of patients

BK-virus and pathophysiology of associated diseases

Brain MRI Findings in Severe COVID-19: A Retrospective Observational Study

Cerebrospinal fluid features in COVID-19 patients with neurologic manifestations: correlation with brain MRI findings in 58 patients

Challenges for HCV vaccine development in HIV-HCV coinfection

Clinical and virological follow-up of a cohort of 76 COVID-19 older hospitalized adults

Clinical phenotypes and outcomes associated with SARS-CoV-2 variant Omicron in critically ill French patients with COVID-19

Comparison of six commercial tick-borne encephalitis IgM and IgG ELISA kits and the molecular characterization of their antigenic design

Congenital Lymphocytic Choriomeningitis Virus: A Case of Prenatal Diagnosis.

Coronavirus disease 2019 3 months after hematopoietic stem cell transplant: A pediatric case report

Development of hepatitis C virus vaccines: challenges and progress.

Distribution and reduction magnitude of HIV-DNA burden in CD4+ T cell subsets depend on art initiation timing.

Dolutegravir reshapes the genetic diversity of HIV-1 reservoirs.

Drug resistance and tropism as markers of the dynamics of HIV-1 DNA quasispecies in blood cells of heavily pretreated patients who achieved sustained virological suppression

EBV limbic encephalitis after allogenic hematopoietic stem cell transplantation.

Early evolution of hepatitis C virus (HCV) quasispecies after liver transplant for HCV-related disease

Efficacy and safety of switching to raltegravir plus atazanavir dual therapy in pretreated HIV-1-infected patients over 144 weeks: a cohort study

Epstein-Barr virus infection and clinical outcome in breast cancer patients correlate with immune cell TNF-α/IFN-γ response

Epstein-Barr virus load in whole blood correlates with HIV surrogate markers and lymphoma: a French national cross-sectional study

Evaluation of Humoral Immunity to SARS-CoV-2: Diagnostic Value of a New Multiplex Addressable Laser Bead Immunoassay

Evaluation of the Epstein-Barr virus R-gene quantification kit in whole blood with different extraction methods and PCR platforms

Evaluation of the performance of SARS-CoV-2 serological tools and their positioning in COVID-19 diagnostic strategies

First case of COVID-19 in a kidney transplant recipient treated with belatacept

Frequent compartmentalization of hepatitis C virus with leukocyte-related amino acids in the setting of liver transplantation.

HIV-1 subtype B-infected MSM may have driven the spread of transmitted resistant strains in France in 2007-12: impact on susceptibility to first-line strategies

Hepatitis B virus mutations potentially conferring adefovir/tenofovir resistance in treatment-naive patients

Hepatitis C virus entry and glucocorticosteroids

Hepatitis C virus entry into hepatocytes: molecular mechanisms and targets for antiviral therapies

Hepatitis C virus envelope glycoprotein signatures are associated with treatment failure and modulation of viral entry and neutralization.

Hepatitis C virus vaccines--progress and perspectives

In Vitro and In Vivo Models for the Study of Human Polyomavirus Infection

In-depth virological assessment of kidney transplant recipients with COVID-19

Inadequate Immune Humoral Response against JC Virus in Progressive Multifocal Leukoencephalopathy Non-Survivors

Intrafamilial Exposure to SARS-CoV-2 Associated with Cellular Immune Response without Seroconversion, France

Intravenous Immunoglobulin Administration Significantly Increases BKPyV Genotype-Specific Neutralizing Antibody Titers in Kidney Transplant Recipients

Intravenous immunoglobulins as a preventive strategy against BK virus viremia and BKV-associated nephropathy in kidney transplant recipients - Results from a proof-of-concept study

Letter to the Editor concerning "Cytomegalovirus prevention strategies and the risk of BK polyomavirus viremia and nephropathy"

Levels of intracellular HIV-DNA in patients with suppressive antiretroviral therapy

Long-term shedding of infectious epstein-barr virus after infectious mononucleosis.

Long-term storage and safe retrieval of human papillomavirus DNA using FTA elute cards

Microcephaly Caused by Lymphocytic Choriomeningitis Virus

Monoclonal anti-claudin 1 antibodies prevent hepatitis C virus infection of primary human hepatocytes

Monoclonal anti-envelope antibody AP33 protects humanized mice against a patient-derived hepatitis C virus challenge

Mutations that alter use of hepatitis C virus cell entry factors mediate escape from neutralizing antibodies

Neuroimaging of Epstein-Barr virus infections in children

Neutralizing Antibody-Mediated Response and Risk of BK Virus-Associated Nephropathy.

Neutralizing antibodies and pathogenesis of hepatitis C virus infection

Neutralizing antibodies in hepatitis C virus infection

Novel human SR-BI antibodies prevent infection and dissemination of HCV in vitro and in humanized mice.

Peculiar Clinical Presentation of Coxsackievirus B4 Infection: Neonatal Restrictive Cardiomyopathy

Performance of the Liaison® XL Murex recHTLV-I/II Immunoassay in the Detection of HTLV-1/2 Antibodies in Serum

Persistence of SARS-CoV-2 antibodies in kidney transplant recipients

Problem-based learning in laboratory medicine resident education: a satisfaction survey

Progressive multifocal leukoencephalopathy: MRI findings in HIV-infected patients are closer to rituximab- than natalizumab-associated PML

Quantification of gp350/220 Epstein-Barr virus (EBV) mRNA by real-time reverse transcription-PCR in EBV-associated diseases

Rapid and early virological response to chronic hepatitis C treatment with IFN 2b or PEG-IFN 2b plus ribavirin in HIV/HCV co-infected patients

Real-time quantitative PCR for assessment of antiviral drug effects against Epstein-Barr virus replication and EBV late mRNA expression

Reduced sensitivity of SARS-CoV-2 variant Delta to antibody neutralization

Reduced sensitivity of infectious SARS-CoV-2 variant B.1.617.2 to monoclonal antibodies and sera from convalescent and vaccinated individuals

SARS-CoV-2 viral dynamics in immunocompromised patients

Sequence Variation in Amplification Target Genes and Standards Influences Interlaboratory Comparison of BK Virus DNA Load Measurement.

Serologic responses to SARS-CoV-2 infection among hospital staff with mild disease in eastern France

Serologic responses to SARS-CoV-2 infection among hospital staff with mild disease in eastern France

The Authors Reply

Tick-Borne Encephalitis in Auvergne-Rhône-Alpes Region, France, 2017-2018

Tick-borne encephalitis virus: molecular determinants of neuropathogenesis of an emerging pathogen

Toward standardization of BK virus monitoring: evaluation of the BK virus R-gene kit for quantification of BK viral load in urine, whole-blood, and plasma specimens.

Viral entry and escape from antibody-mediated neutralization influence hepatitis C virus reinfection in liver transplantation

Virus-host interactions during hepatitis C virus entry — implications for pathogenesis and novel treatment approaches