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List of works by Claire Duvallet

A practical guide to methods controlling false discoveries in computational biology.

scientific article published on 4 June 2019

Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function.

scientific article published on 20 May 2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Correcting for batch effects in case-control microbiome studies.

scientific article

Data detectives, self-love, and humility: a research parasite's perspective

scientific article published on 01 January 2020

Framework for rational donor selection in fecal microbiota transplant clinical trials

scientific article published on 10 October 2019

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

scientific article published on 8 November 2022

Mapping Community Opioid Exposure Through Wastewater-Based Epidemiology as a Means to Engage Pharmacies in Harm Reduction Efforts

scientific article published on 20 August 2020

Meta-analysis generates and prioritizes hypotheses for translational microbiome research

scientific article published on 19 January 2018

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

scientific article

Metrics to relate COVID-19 wastewater data to clinical testing dynamics

scientific article published in April 2022

MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes

scientific article published in 2022

Nationwide Trends in COVID-19 Cases and SARS-CoV-2 RNA Wastewater Concentrations in the United States

scientific article published on 3 May 2022

Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort

scientific article published in Scientific Reports

Predicting human health from biofluid-based metabolomics using machine learning

scientific article published on 19 October 2020

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Rapid Assessment of Opioid Exposure and Treatment in Cities Through Robotic Collection and Chemical Analysis of Wastewater

scientific article published on 09 January 2020

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

scientific article published in January 2022

SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

scientific article published on 21 July 2020

SARS-CoV-2 titers in wastewater are higher than expected from clinically confirmed cases

scientific article published on 07 April 2020

SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

scientific article published on 23 June 2020

Wastewater surveillance of SARS-CoV-2 across 40 U.S. states from February to June 2020

scientific article published in September 2021

dbOTU3: A new implementation of distribution-based OTU calling

scientific article

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