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List of works by Daniel Falush

A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data

scientific article

A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

scientific article published on 02 August 2018

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

scientific article published on 7 November 2006

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

scientific article published in Nature Communications

Adapting for life in the extreme

scientific article published on 15 July 2019

An African origin for the intimate association between humans and Helicobacter pylori

scientific article

Campylobacter genotyping to determine the source of human infection.

scientific article published on April 2009

Convergence of Campylobacter species: implications for bacterial evolution

scientific article published in April 2008

Correction: Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas.

scientific article published on 14 April 2017

Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh

scholarly article

Efficient inference of recombination hot regions in bacterial genomes.

scientific article

Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus.

scientific article

Ethnic and geographic differentiation of Helicobacter pylori within Iran

scientific article

Evolution of pathogenicity in the Bacillus cereus group

scientific article

Genealogical typing of Neisseria meningitidis.

scientific article published on 30 July 2009

Genome-wide association mapping in bacteria?

scientific article

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

scientific article

Genomic changes during chronic Helicobacter pylori infection

scientific article published on January 2006

Haplotype background, repeat length evolution, and Huntington's disease

scientific article published on December 2009

Helicobacter pylori genome evolution during human infection

scientific article

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

scientific article published on 27 December 2012

Host-associated genetic import in Campylobacter jejuni

scientific article published on February 2007

Hybrid Vibrio vulnificus.

scientific article published on January 2005

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

scientific article

Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

scientific article published on 27 April 2021

Inference of bacterial microevolution using multilocus sequence data

scientific article

Inference of homologous recombination in bacteria using whole-genome sequences

scientific article

Inference of population structure using dense haplotype data

scientific article (publication date: 2012)

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

scientific article

Inferring genomic flux in bacteria

scientific article published on 17 November 2008

Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families

scientific article (publication date: 22 July 2010)

Mismatch induced speciation in Salmonella: model and data

scientific article

Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori

scientific article

Natural transformation of helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size

scientific article

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli

scientific article

Plastic cells and populations: DNA substrate characteristics in Helicobacter pylori transformation define a flexible but conservative system for genomic variation

scientific article published on 12 June 2007

Population identification using genetic data

scientific article

Progressive genome-wide introgression in agricultural Campylobacter coli

scientific article published on 20 December 2012

Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis

scientific article

Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages

scientific article published in 2021

RADpainter and fineRADstructure: population inference from RADseq data

scientific article published on 20 February 2018

RADpainter and fineRADstructure: population inference from RADseq data

Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas

scientific article

Recent acquisition of Helicobacter pylori by Baka pygmies.

scientific article

Recent mixing of Vibrio parahaemolyticus populations

scientific article published on 24 June 2019

Recombination and population structure in Salmonella enterica.

scientific article

Roary: rapid large-scale prokaryote pan genome analysis

scientific article

Sequence typing and comparison of population biology of Campylobacter coli and Campylobacter jejuni.

scientific article

Sex and virulence in Escherichia coli: an evolutionary perspective

scientific article (publication date: June 2006)

SimMLST: simulation of multi-locus sequence typing data under a neutral model

scientific article

The Landscape of Realized Homologous Recombination in Pathogenic Bacteria.

scientific article published on 29 October 2015

The fine-scale genetic structure of the British population

scientific article

The landscape of coadaptation in Vibrio parahaemolyticus

scientific article published on 20 March 2020

The speciation and hybridization history of the genus Salmonella

scientific article published on 26 July 2019

Traces of human migrations in Helicobacter pylori populations

scientific article

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