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List of works by Soojin V Yi

A fully resolved genus level phylogeny of neotropical primates (Platyrrhini).

scientific article

A supergene-linked estrogen receptor drives alternative phenotypes in a polymorphic songbird

scientific article published on 17 August 2020

Accelerated evolution of oligodendrocytes in the human brain

scientific article published on 11 November 2019

Bis-class: a new classification tool of methylation status using bayes classifier and local methylation information

scientific article

Body-hypomethylated human genes harbor extensive intragenic transcriptional activity and are prone to cancer-associated dysregulation

scientific article

Cell type-specific epigenetic links to schizophrenia risk in the brain

scientific article published on 09 July 2019

Comparative Methylome Analyses Identify Epigenetic Regulatory Loci of Human Brain Evolution.

scientific article published on 25 August 2016

Comparative analyses of DNA methylation and sequence evolution using Nasonia genomes

scientific article published on 20 June 2011

Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids

scientific article published on 10 July 2008

Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum.

scientific article published on 18 May 2018

Computational approaches for understanding the evolution of DNA methylation in animals

scientific article

Correction: DNA methylation and transcriptional noise.

scientific article published on 30 June 2014

Correlated asymmetry of sequence and functional divergence between duplicate proteins of Saccharomyces cerevisiae

scientific article published on 01 March 2006

Correlation Patterns Between DNA Methylation and Gene Expression in The Cancer Genome Atlas

article

DNA methylation and evolution of duplicate genes

scientific article published on 07 April 2014

DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation

scientific article (publication date: 2010)

DNA methylation and structural and functional bimodality of vertebrate promoters

scientific article published on 09 May 2008

DNA methylation and transcriptional noise ⬇️

scientific article published on April 26, 2013

DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera

scholarly article

Detecting differential DNA methylation from sequencing of bisulfite converted DNA of diverse species

scientific article published in January 2019

Development and annotation of shotgun sequence libraries from New World monkeys.

scientific article

Development of novel EST-SSR markers for ploidy identification based on de novo transcriptome assembly for Misgurnus anguillicaudatus

scientific article published on 12 April 2018

Distinct epigenomic and transcriptomic modifications associated with Wolbachia-mediated asexuality

scientific article published on 18 March 2020

Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution

scientific article

Doubts about complex speciation between humans and chimpanzees

scientific article published on 05 August 2009

Effects of DNA Methylation and Chromatin State on Rates of Molecular Evolution in Insects

scientific article published on 4 December 2015

Epigenetic inheritance and genome regulation: is DNA methylation linked to ploidy in haplodiploid insects?

scientific article published on 30 April 2014

Epigenetics and evolution

scientific article

Erratum to: The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes

scientific article published on 12 February 2015

Evaluation of Possible Proximate Mechanisms Underlying the Kinship Theory of Intragenomic Conflict in Social Insects

scientific article published in December 2016

Evidence for positive selection on recent human transposable element insertions

scientific article published on 25 June 2018

Evolution of microRNAs and the diversification of species

scientific article

Evolutionary Transition of Promoter and Gene Body DNA Methylation across Invertebrate-Vertebrate Boundary

scientific article published on 29 December 2015

Evolutionary rate variation in Old World monkeys

scientific article (publication date: 23 June 2009)

Functional Relevance of CpG Island Length for Regulation of Gene Expression ⬇️

scientific article published on February 1, 2011

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

scientific article

Functional conservation of DNA methylation in the pea aphid and the honeybee

scientific article (publication date: 2010)

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals

scientific article published on 5 October 2018

Fundamental diversity of human CpG islands at multiple biological levels

scientific article

Genomic Landscape of Methylation Islands in Hymenopteran Insects

scholarly article by Hyeonsoo Jeong et al published 1 October 2018 in Genome Biology and Evolution

Heterogeneous genomic molecular clocks in primates

scientific article (publication date: 6 October 2006)

Impacts of Chromatin States and Long-Range Genomic Segments on Aging and DNA Methylation

scientific article published on 19 June 2015

Inactivation of mismatch repair increases the diversity of Vibrio parahaemolyticus

scientific article

Inside the supergene of the bird with four sexes

scientific article published on 13 September 2020

Insights into Epigenome Evolution from Animal and Plant Methylomes

scientific article published on 25 September 2017

Kin selection, genomics and caste-antagonistic pleiotropy

scientific article published on 16 October 2013

Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation

scientific article published on 24 February 2021

Lineage and parent-of-origin effects in DNA methylation of honey bees (Apis mellifera) revealed by reciprocal crosses and whole-genome bisulfite sequencing

scientific article published on 29 June 2020

Lineage-specific variation in slow- and fast-X evolution in primates.

scientific article published on 2 February 2012

Mammalian nonsynonymous sites are not overdispersed: comparative genomic analysis of index of dispersion of mammalian proteins

scientific article published on 19 December 2007

Morris Goodman’s hominoid rate slowdown: The importance of being neutral ⬇️

scientific article published on August 10, 2012

Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation

scientific article published on 30 January 2008

Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation

scientific article

Myxosporea (Myxozoa, Cnidaria) lack DNA cytosine methylation

scientific article published on 08 September 2020

Non-adaptive evolution of genome complexity

scientific article published on October 2006

Obligate mutualism within a host drives the extreme specialization of a fig wasp genome

scientific article (publication date: 20 December 2013)

On the origin and evolution of SARS-CoV-2

scientific article

On the presence and role of human gene-body DNA methylation.

scientific article

Path lengths in protein-protein interaction networks and biological complexity.

scientific article published on 8 April 2011

Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects

scientific article published on January 2013

Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins

scientific article

Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variation

scientific article

Rapid regulatory evolution of a nonrecombining autosome linked to divergent behavioral phenotypes.

scientific article published on 26 February 2018

Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system

scientific article published on 23 September 2019

Relaxed selection is a precursor to the evolution of phenotypic plasticity

scientific article

Selection on the regulation of sympathetic nervous activity in humans and chimpanzees.

scientific article

Sociality is linked to rates of protein evolution in a highly social insect

scientific article published on 28 January 2010

Specific modifications of histone tails, but not DNA methylation, mirror the temporal variation of mammalian recombination hotspots

scientific article published on 16 October 2014

The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes

scientific article

The evolution of invertebrate gene body methylation

scientific article published on 10 February 2012

The evolution of lineage-specific clusters of single nucleotide substitutions in the human genome.

scientific article published on 14 June 2013

The function of intragenic DNA methylation: insights from insect epigenomes.

scientific article published on 18 March 2013

The genome of Tetranychus urticae reveals herbivorous pest adaptations

scientific article

The genome of the fire ant Solenopsis invicta

scientific article

The multivariate association between genomewide DNA methylation and climate across the range of Arabidopsis thaliana

scientific article published on 6 February 2016

The tempo and mode of New World monkey evolution and biogeography in the context of phylogenomic analysis.

scientific article published on 30 April 2014

Understanding relationship between sequence and functional evolution in yeast proteins

scientific article published on 12 December 2006

Variable molecular clocks in hominoids

scientific article

What Signatures Dominantly Associate with Gene Age?

scientific article published on 7 September 2016

What are the determinants of gene expression levels and breadths in the human genome? ⬇️

scientific article published on September 26, 2011

Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation

scientific article

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