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List of works by Michael C. Zody

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

scientific article

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing

scientific article published on 08 June 2013

Advancing RNA-Seq analysis

scientific article published on 01 May 2010

Analysis of the DNA sequence and duplication history of human chromosome 15

scientific article

Characterization of a Novel Orthomyxo-like Virus Causing Mass Die-Offs of Tilapia

scientific article published on 05 April 2016

Closing gaps in the human genome using sequencing by synthesis

scientific article published on 02 June 2009

Common deletion polymorphisms in the human genome.

scientific article

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification

scientific article published on September 8, 2012

Conpair: concordance and contamination estimator for matched tumor-normal pairs

scientific article published on 26 June 2016

DNA sequence and analysis of human chromosome 18

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DNA sequence and analysis of human chromosome 8

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DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

scientific article

Efficient mapping of mendelian traits in dogs through genome-wide association

scientific article

Erratum: Corrigendum: DNA sequence and analysis of human chromosome 18

scientific article published in Nature

Evolutionary toggling of the MAPT 17q21.31 inversion region

scientific article

Exploiting nucleotide composition to engineer promoters

scientific article

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment

scientific article

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

scientific article

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

scientific article

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

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Genome sequence, comparative analysis and haplotype structure of the domestic dog

scientific article

Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes

scientific article published on 03 December 2018

Genome-wide Analyses Identify KIF5A as a Novel ALS Gene

scientific article published in March 2018

Genome-wide somatic variant calling using localized colored de Bruijn graphs

High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections

scientific article published on 16 November 2011

Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data

scientific article published on March 15, 2012

Human chromosome 11 DNA sequence and analysis including novel gene identification

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identification of mixups among DNA sequencing plates

scientific article published in November 2002

Identifying novel constrained elements by exploiting biased substitution patterns

scientific article

Indel variant analysis of short-read sequencing data with Scalpel.

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Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Initial sequencing and comparative analysis of the mouse genome

scientific article

Lancet: genome-wide somatic variant calling using localized colored DeBruijn graphs

Lineage-specific biology revealed by a finished genome assembly of the mouse

scientific article

Mapping and characterization of structural variation in 17,795 deeply sequenced human genomes

scientific article published on 31 December 2018

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing

scientific article

Novel origins of copy number variation in the dog genome

scientific article

Somatic mutations affect key pathways in lung adenocarcinoma

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Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison

scientific article published on 9 November 2005

The Rose-comb mutation in chickens constitutes a structural rearrangement causing both altered comb morphology and defective sperm motility

scientific article

The genomic basis of adaptive evolution in threespine sticklebacks

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The mosaic structure of variation in the laboratory mouse genome

scientific article published in Nature

Whole-genome resequencing reveals loci under selection during chicken domestication

scientific article

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

scientific article

Why do human diversity levels vary at a megabase scale?

scientific article published on September 2005

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

scientific article published on 27 March 2018