List of works by Justin P Shaffer

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

scientific article published on 14 November 2020

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype

scientific article published in 2022

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

scientific article published on 17 March 2020

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021

Enhancing untargeted metabolomics using metadata-based source annotation

scientific article published in 2022

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

scientific article published on 18 May 2020

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

scientific article published on 04 April 2022

Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants

scientific article published on 31 October 2019

Transcriptional Profiles of a Foliar Fungal Endophyte (<i>Pestalotiopsis</i>, Ascomycota) and Its Bacterial Symbiont (<i>Luteibacter</i>, <i>Gammaproteobacteria</i>) Reveal Sulfur Exchange and Growth Regulation during Early Phases of Symbiotic Inter

scientific article published on 16 March 2022

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