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List of works by Yutaka Suzuki

5'-end SAGE for the analysis of transcriptional start sites

scientific article

A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species.

scientific article published on 14 July 2015

A comparison of the rest complex binding patterns in embryonic stem cells and epiblast stem cells

scientific article

A de novo mutation of the MYH7 gene in a large Chinese family with autosomal dominant myopathy

scientific article published on 16 July 2015

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

scientific article published on 9 March 2015

A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle

scientific article

A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins

scientific article

A role for transcription from a piRNA cluster in de novo piRNA production

scientific article published on 22 December 2011

A single female-specific piRNA is the primary determiner of sex in the silkworm

scientific article

AB005. Genomics on site of detection of malaria.

scientific article

AB043. Nanopore sequencing for genotyping Dengue virus.

scientific article

Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines

scientific article

Altered expression of testis-specific genes, piRNAs, and transposons in the silkworm ovary masculinized by a W chromosome mutation ⬇️

scientific article published on March 28, 2012

Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.

scientific article

Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs

scientific article

Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs

scientific article

Arid5b facilitates chondrogenesis by recruiting the histone demethylase Phf2 to Sox9-regulated genes

scientific article

Artificial "ping-pong" cascade of PIWI-interacting RNA in silkworm cells

scientific article published on 24 October 2016

Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species

scientific article published on 19 November 2015

Bm-muted, orthologous to mouse muted and encoding a subunit of the BLOC-1 complex, is responsible for the otm translucent mutation of the silkworm Bombyx mori.

scientific article

Bombyx mori nucleopolyhedrovirus actin rearrangement-inducing factor 1 enhances systemic infection in B. mori larvae

scientific article published on 25 March 2015

CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes

scientific article published on 3 March 2014

Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish.

scientific article published in May 2018

Centaurin-alpha1 is a phosphatidylinositol 3-kinase-dependent activator of ERK1/2 mitogen-activated protein kinases

scientific article

Characterization of STAT6 Target Genes in Human B Cells and Lung Epithelial Cells ⬇️

scientific article published on August 9, 2011

Characterization of a novel chromodomain-containing gene from the silkworm, Bombyx mori.

scientific article published on 11 July 2013

Characterization of cancer omics and drug perturbations in panels of lung cancer cells

scientific article published on 20 December 2019

Characterization of genomic organization of the adenosine A2A receptor gene by molecular and bioinformatics analyses

scientific article published in March 2004

Characterization of the mitochondrial genome of Rousettus leschenaulti.

scientific article published on 2 July 2013

Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer

scientific article published on 17 April 2010

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

scientific article published on 11 December 2008

Coelacanth genomes reveal signatures for evolutionary transition from water to land

scientific article (publication date: October 2013)

Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus

scientific article

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

scientific article published on July 2003

Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response.

scientific article published on 22 February 2018

Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs

scientific article published on 6 December 2006

Comparative Analysis of Genome and Epigenome in Closely Related Medaka Species Identifies Conserved Sequence Preferences for DNA Hypomethylated Domains.

scientific article published in August 2016

Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing

scientific article

Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera

scientific article published on 23 September 2020

Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics

scientific article published on 14 May 2008

Comprehensive gene expression analysis of 5'-end of mRNA identified novel intronic transcripts associated with hepatocellular carcinoma

scientific article published on 21 January 2010

Computation of rank and select functions on hierarchical binary string and its application to genome mapping problems for short-read DNA sequences

scientific article

Concurrent loss of Ezh2 and Tet2 cooperates in the pathogenesis of myelodysplastic disorders

scientific article published on 11 November 2013

Construction and analysis of full-length cDNA library of Cryptosporidium parvum ⬇️

scientific article published on March 21, 2011

Construction of a Full-Length Enriched and a 5'-End Enriched cDNA Library Using the Oligo-Capping Method

scientific article published on January 1, 2003

Construction of mate pair full-length cDNAs libraries and characterization of transcriptional start sites and termination sites

scientific article

Coordinated changes in DNA methylation in antigen-specific memory CD4 T cells

scientific article published on 18 March 2013

Correction: A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species.

scientific article published on 22 September 2015

Corrigendum: Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins

scientific article published on June 2015

Corrigendum: Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori

scientific article published on 22 September 2020

Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly

scientific article

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data

scientific article

DBTSS provides a tissue specific dynamic view of Transcription Start Sites

scientific article

DBTSS, DataBase of Transcriptional Start Sites: progress report 2004.

scientific article published on January 2004

DBTSS/DBKERO for integrated analysis of transcriptional regulation

scientific article published on 8 November 2017

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

scientific article

DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs ⬇️

scientific article published on January 1, 2002

DBTSS: database of transcription start sites, progress report 2008.

scientific article published on 16 October 2007

DKK1, a negative regulator of Wnt signaling, is a target of the beta-catenin/TCF pathway

scientific article

Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries.

scientific article

Decreased KPNB1 Expression is Induced by PLK1 Inhibition and Leads to Apoptosis in Lung Adenocarcinoma

scientific article published on 6 November 2017

Detection of APC mosaicism by next-generation sequencing in an FAP patient.

scientific article published on 26 February 2015

Detection of gene expression in synovium of patients with osteoarthritis using a random sequencing method

scientific article published on October 2007

Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites

scientific article published on 27 June 2014

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis.

scientific article published on 12 September 2007

Diverse DNA methylation statuses at alternative promoters of human genes in various tissues

scientific article published in August 2006

Diversity of translation start sites may define increased complexity of the human short ORFeome

scientific article

Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.

scientific article

Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation.

scientific article published on 02 March 2015

Effects of androgen and oestrogen on the IGF pathways controlling phallus growth

scientific article published on 01 January 2019

Evaluation and application of RNA-Seq by MinION

scientific article published on 01 February 2019

Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy.

scientific article published on 5 March 2018

Expressed sequence tags from cynomolgus monkey (Macaca fascicularis) liver: a systematic identification of drug-metabolizing enzymes

scientific article

Expression of miR‑26a exhibits a negative correlation with HMGA1 and regulates cancer progression by targeting HMGA1 in lung adenocarcinoma cells

scientific article published on 15 December 2016

Expression profiling and characterization of 4200 genes cloned from primary neuroblastomas: identification of 305 genes differentially expressed between favorable and unfavorable subsets

scientific article (publication date: 21 August 2003)

Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas

scientific article

Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths

scientific article

Ezh2 augments leukemogenicity by reinforcing differentiation blockage in acute myeloid leukemia

scientific article published on 7 June 2012

Frequent pathway mutations of splicing machinery in myelodysplasia

scientific article (publication date: 11 September 2011)

From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri

scientific article published on 2 May 2016

Fugu ESTs: new resources for transcription analysis and genome annotation.

scientific article published on 12 November 2003

Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.

scientific article published on 4 November 2008

Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species

scientific article

Functional divergence of duplicate genes several million years after gene duplication in Arabidopsis

scientific article published on 21 February 2018

Functional gene screening system identified TRPV4 as a regulator of chondrogenic differentiation

scientific article published on 5 September 2007

Functionally distinct Gata3/Chd4 complexes coordinately establish T helper 2 (Th2) cell identity

scientific article published on 7 March 2013

Gene expression analysis of human hepatocellular carcinoma by using full-length cDNA library

scientific article published in March 2006

Gene structure, dual-promoters and mRNA alternative splicing of the human and mouse regulator of G protein signaling GAIP/RGS19

scientific article (publication date: 24 January 2003)

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

scientific article

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

scientific article

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

article

Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity

scientific article published on 19 March 2005

Genome-wide analysis reveals unique regulation of transcription of Th2-specific genes by GATA3

scientific journal article

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

scientific article published on 3 March 2011

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

scientific article

Genome-wide identification and annotation of HIF-1α binding sites in two cell lines using massively parallel sequencing

scientific article

Genome-wide profiling of the core clock protein BMAL1 targets reveals a strict relationship with metabolism

scientific article

Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population.

scientific article

Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita

scientific article published on 15 September 2017

Giardia lamblia transcriptome analysis using TSS-Seq and RNA-Seq

scientific article

H-DBAS: human-transcriptome database for alternative splicing: update 2010

scientific article

High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer

scientific article

High-resolution characterization of Toxoplasma gondii transcriptome with a massive parallel sequencing method

scientific article published on 3 June 2010

Hormone-responsive genes in the SHH and WNT/β-catenin signaling pathways influence urethral closure and phallus growth†

article

Hsp90 facilitates accurate loading of precursor piRNAs into PIWI proteins.

scientific article published on 16 May 2013

Identification and characterization of cancer mutations in Japanese lung adenocarcinoma without sequencing of normal tissue counterparts

scientific article

Identification of physical interactions between genomic regions by enChIP-Seq.

scientific article

Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines

scientific article published on 21 March 2018

Identification of two novel primate-specific genes in DSCR.

scientific article published in June 2002

Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs

scientific article

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

scientific article

Intensive single-cell analysis reveals immune-cell diversity among healthy individuals

scientific article published on 05 April 2022

Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event

scientific article

Intrinsic promoter activities of primary DNA sequences in the human genome

scientific article published on April 2007

Jmjd2c histone demethylase enhances the expression of Mdm2 oncogene

scientific article

Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice

scientific article published on 12 November 2019

Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates.

scientific article published on 12 June 2014

Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori.

scientific article

Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta

scientific article published on 24 February 2008

Large-scale collection and characterization of promoters of human and mouse genes.

scientific article

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

scientific article

Local potentiation of stress-responsive genes by upstream noncoding transcription

scientific article published on 3 March 2016

Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line

scientific article

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs

scientific article published on 05 October 2008

MAML1 Enhances the Transcriptional Activity of Runx2 and Plays a Role in Bone Development ⬇️

scientific article published on January 10, 2013

Major chimpanzee-specific structural changes in sperm development-associated genes ⬇️

scientific article published on April 12, 2011

Massive transcriptional start site analysis of human genes in hypoxia cells

scientific article

Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle

scientific article published on 6 December 2017

Methylome diversification through changes in DNA methyltransferase sequence specificity.

scientific article

Molecular basis of wing coloration in a Batesian mimic butterfly, Papilio polytes.

scientific article

Molecular cloning, mRNA expression and chromosomal localization of mouse angiotensin-converting enzyme-related carboxypeptidase (mACE2).

scientific article published on August 2002

Monitoring endoplasmic reticulum stress responsive mRNAs by RNA sequencing ⬇️

scientific article published on March 17, 2012

Monoallelic, antisense and total RNA transcription in an in vitro neural differentiation system based on F1 hybrid mice

scientific article published on 09 September 2019

Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori

scientific article published on 17 July 2020

Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma

scientific article (publication date: 18 July 2003)

No novel, high penetrant gene might remain to be found in Japanese patients with unknown MODY.

scientific article published on 18 April 2018

OASIS is a transcriptional activator of CREB/ATF family with a transmembrane domain

scientific article

Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification

scientific article published on 9 July 2014

Opalin, a transmembrane sialylglycoprotein located in the central nervous system myelin paranodal loop membrane

scientific journal article

Phasing analysis of lung cancer genomes using a long read sequencer

scientific article published in 2022

Predicting promoter activities of primary human DNA sequences ⬇️

scientific article published on April 12, 2011

Promoter prediction analysis on the whole human genome

scientific article published in November 2004

RNA sequencing: from sample preparation to analysis

scientific article

Restriction glycosylases: involvement of endonuclease activities in the restriction process

scientific article

SAGE analysis of early oogenesis in the silkworm, Bombyx mori.

scientific article published on 15 November 2006

Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor

scientific article

Screening for possible miRNA–mRNA associations in a colon cancer cell line ⬇️

scientific article published on August 9, 2013

Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer

scientific article published on 27 June 2017

Serotyping dengue virus with isothermal amplification and a portable sequencer

scientific article

Sexually biased transcripts at early embryonic stages of the silkworm depend on the sex chromosome constitution

scientific article published on 20 January 2015

Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries

scientific article

Silkworm HP1a transcriptionally enhances highly expressed euchromatic genes via association with their transcription start sites

scientific article

Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment

scientific article published on 3 April 2015

Small open reading frames in 5' untranslated regions of mRnas

scientific article published on October 2003

Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs

scientific article

The 5' terminal oligopyrimidine tract of human elongation factor 1A-1 gene functions as a transcriptional initiator and produces a variable number of Us at the transcriptional level

scientific article

The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes.

scientific article published on 21 May 2009

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

article

The Endosymbiotic Bacterium Wolbachia Selectively Kills Male Hosts by Targeting the Masculinizing Gene.

scientific article published on 14 July 2015

The comprehensive epigenome map of piRNA clusters

scientific article published on 20 December 2012

The functional consequences of alternative promoter use in mammalian genomes

scientific article published on 07 March 2008

The landscape of C. elegans 3'UTRs

scientific article

The silkworm W chromosome is a source of female-enriched piRNAs.

scientific article published on 21 October 2011

The tumor suppressor Rb and its related Rbl2 genes are regulated by Utx histone demethylase

scientific article published on 30 July 2010

Thyrotrophin in the pars tuberalis triggers photoperiodic response.

scientific article published in March 2008

Transcriptome analyses and transcriptome databases

scientific article published in August 2004

Transcriptome analyses of human genes and applications for proteome analyses

scientific article published in April 2006

Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai

scholarly article

Transcriptome profiling reveals infection strategy of an insect maculavirus.

scientific article published on 17 January 2018

Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity

scientific article published on 01 December 2020

Zygotic amplification of secondary piRNAs during silkworm embryogenesis.

scientific article

[Human transcriptome]

scientific article published on 01 December 2005

dbQSNP: a database of SNPs in human promoter regions with allele frequency information determined by single-strand conformation polymorphism-based methods

scientific article published on 01 August 2005

p53-inducible DPYSL4 associates with mitochondrial supercomplexes and regulates energy metabolism in adipocytes and cancer cells.

scientific article published on 30 July 2018

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