List of works - Hagit Shatkay

A large-scale evaluation of computational protein function prediction

scientific article

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

scientific article

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance

An integrative scoring system for ranking SNPs by their potential deleterious effects

scientific article published on 19 February 2009

BNTagger: improved tagging SNP selection using Bayesian networks

scientific article published in July 2006

Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia

Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification

article by Moumita Bhattacharya et al published 12 December 2018 in BMC Medical Informatics and Decision Making

Co-occurrence of medical conditions: Exposing patterns through probabilistic topic modeling of snomed codes.

scientific article published on 12 April 2018

Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier

scientific article

Compound Image Segmentation of Published Biomedical Figures

scientific article published on 10 October 2017

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

scientific article published on 27 July 2012

Corrigendum to "Text as data: Using text-based features for proteins representation and for computational prediction of their characteristics" [Methods 74 (2015) 54-64].

scientific article published on 17 June 2016

Discovering semantic features in the literature: a foundation for building functional associations

scientific article

Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD).

scientific article published on January 2017

F-SNP: computationally predicted functional SNPs for disease association studies

scientific article

Figure and caption extraction from biomedical documents

scientific article published on 01 November 2019

Functionally Informative Tag SNP Selection Using a Pareto-Optimal Approach ⬇️

scientific article published on January 1, 2010

Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

Hairpins in bookstacks: information retrieval from biomedical text

scientific article

How to get the most out of your curation effort

scientific article

Identifying Ventricular Arrhythmias and Their Predictors by Applying Machine Learning Methods to Electronic Health Records in Patients With Hypertrophic Cardiomyopathy (HCM-VAr-Risk Model)

scientific article published on 27 February 2019

Integrating image caption information into biomedical document classification in support of biocuration

scientific article published on 01 January 2020

Integrating image data into biomedical text categorization

scientific article

Mining the biomedical literature in the genomic era: an overview

scientific article published on January 2003

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users

scientific article published on 20 August 2008

New directions in biomedical text annotation: definitions, guidelines and corpus construction

scientific article published on 25 July 2006

Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge ⬇️

scientific article published on February 28, 2013

Ranking single nucleotide polymorphisms by potential deleterious effects.

scientific article published on 6 November 2008

Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

scientific article published on 18 July 2018

Segmenting Compound Biomedical Figures into Their Constituent Panels

scientific article published on 17 August 2017

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

scientific article published on 14 July 2014

Text as data: using text-based features for proteins representation and for computational prediction of their characteristics

scientific article

Text mining for biology - the way forward: opinions from leading scientists

scientific article (publication date: 2008)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

scientific article

ThurGood: Evaluating Assembly-to-Assembly Mapping

scientific article published on 01 January 2004

Translational Knowledge Discovery Between Drug Interactions and Pharmacogenetics

scientific article published on 03 February 2020

Using cluster ensemble and validation to identify subtypes of pervasive developmental disorders.

scientific article published on 11 October 2007

List of works by Hagit Shatkay

A large-scale evaluation of computational protein function prediction

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance

An integrative scoring system for ranking SNPs by their potential deleterious effects

BNTagger: improved tagging SNP selection using Bayesian networks

Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia

Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification

Co-occurrence of medical conditions: Exposing patterns through probabilistic topic modeling of snomed codes.

Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier

Compound Image Segmentation of Published Biomedical Figures

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

Corrigendum to "Text as data: Using text-based features for proteins representation and for computational prediction of their characteristics" [Methods 74 (2015) 54-64].

Discovering semantic features in the literature: a foundation for building functional associations

Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD).

F-SNP: computationally predicted functional SNPs for disease association studies

Figure and caption extraction from biomedical documents

Functionally Informative Tag SNP Selection Using a Pareto-Optimal Approach ⬇️

Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

Hairpins in bookstacks: information retrieval from biomedical text

How to get the most out of your curation effort

Identifying Ventricular Arrhythmias and Their Predictors by Applying Machine Learning Methods to Electronic Health Records in Patients With Hypertrophic Cardiomyopathy (HCM-VAr-Risk Model)

Integrating image caption information into biomedical document classification in support of biocuration

Integrating image data into biomedical text categorization

Mining the biomedical literature in the genomic era: an overview

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users

New directions in biomedical text annotation: definitions, guidelines and corpus construction

Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge ⬇️

Ranking single nucleotide polymorphisms by potential deleterious effects.

Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

Segmenting Compound Biomedical Figures into Their Constituent Panels

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

Text as data: using text-based features for proteins representation and for computational prediction of their characteristics

Text mining for biology - the way forward: opinions from leading scientists

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

ThurGood: Evaluating Assembly-to-Assembly Mapping

Translational Knowledge Discovery Between Drug Interactions and Pharmacogenetics

Using cluster ensemble and validation to identify subtypes of pervasive developmental disorders.