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List of works by Julia Zeitlinger

A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing

scientific article published on 01 June 2019

A computational pipeline for comparative ChIP-seq analyses

scientific article published on 15 December 2011

A global change in RNA polymerase II pausing during the Drosophila midblastula transition

scientific article published on 13 August 2013

Activated signal transduction kinases frequently occupy target genes

scientific article published on 01 July 2006

An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster

scientific article published on 03 December 2019

Author Correction: Suppression of mA reader Ythdf2 promotes hematopoietic stem cell expansion

scholarly article by Zhenrui Li published in October 2018

Capicua controls Toll/IL-1 signaling targets independently of RTK regulation.

scientific article published on 5 February 2018

ChIP-nexus enables improved detection of in vivo transcription factor binding footprints

scientific article published on 9 March 2015

Cori meets Dobzhansky: Evolution and Gene Expression in St. Louis

article

Developmental gene regulation in the era of genomics

scientific article published on 04 January 2010

Drosophila poised enhancers are generated during tissue patterning with the help of repression

scientific article

Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis.

scientific article published on 27 September 2016

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.

scientific article published on 7 August 2017

High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species

scientific article published on 10 April 2011

High-quality genome assemblies of 15 Drosophila species generated using Nanopore sequencing

High-resolution computational models of genome binding events.

scientific article published on August 2006

Highly Contiguous Genome Assemblies of 15 Species Generated Using Nanopore Sequencing

article

Hippo Reprograms the Transcriptional Response to Ras Signaling.

scientific article published on September 2017

Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis

scientific article published on 2 October 2017

Identification of transcription factor binding sites from ChIP-seq data at high resolution

scientific article

Molecular evolution of the Yap/Yorkie proto-oncogene and elucidation of its core transcriptional program

scientific article

Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo.

scientific article

Paused RNA polymerase II inhibits new transcriptional initiation

scientific article published on 15 May 2017

Poised RNA Polymerase II Changes over Developmental Time and Prepares Genes for Future Expression ⬇️

scientific article published on December 20, 2012

Polycomb complexes repress developmental regulators in murine embryonic stem cells

scientific article (publication date: 18 May 2006)

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

scientific article

Promoter elements associated with RNA Pol II stalling in the Drosophila embryo

scholarly article

RNA polymerase II pausing during development

scientific article published on March 2014

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

scientific article

Reporter-ChIP-nexus reveals strong contribution of the initiator sequence to RNA polymerase pausing

scientific article published on 25 April 2019

Seven myths of how transcription factors read the cis-regulatory code

scientific article published on 04 September 2020

Short tandem repeats bind transcription factors to tune eukaryotic gene expression

scientific article published on 21 September 2023

Suppression of mA reader Ythdf2 promotes hematopoietic stem cell expansion

scientific article published on 31 July 2018

TATA and paused promoters active in differentiated tissues have distinct expression characteristics

scientific article published on 01 February 2021

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

scientific article

Transcriptional regulatory code of a eukaryotic genome

scientific article

Transcriptional regulatory networks in Saccharomyces cerevisiae

scientific article

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

scientific article published on February 2007

Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation.

scientific article

β-Catenin and Associated Proteins Regulate Lineage Differentiation in Ground State Mouse Embryonic Stem Cells

scientific article published on 07 August 2020

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