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List of works by Charles Agoti

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya

scientific article published on 24 January 2019

Congenital microcephaly unrelated to flavivirus exposure in coastal Kenya

scientific article published on 15 November 2019

Effectiveness of Rotarix ® vaccine in Africa in the first decade of progressive introduction, 2009-2019:  systematic review and meta-analysis

scientific article published on 06 August 2020

Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya

scientific article published on 23 February 2022

Forecasting the scale of the COVID-19 epidemic in Kenya

scientific article published on 14 April 2020

Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017

scientific article published on 13 January 2020

Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya

scientific article published on 14 November 2019

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17

scientific article published on 15 July 2020

Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance

scientific article published on 01 January 2018

Molecular Epidemiology of Human Rhinovirus From 1-Year Surveillance Within a School Setting in Rural Coastal Kenya

scientific article published on 27 August 2020

Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013

scientific article published on 01 January 2018

Multiple Introductions and Predominance of Rotavirus Group A Genotype G3P[8] in Kilifi, Coastal Kenya, 4 Years after Nationwide Vaccine Introduction

scientific article published on 24 November 2020

Pooled testing conserves SARS-CoV-2 laboratory resources and improves test turn-around time: experience on the Kenyan Coast

scientific article published on 06 August 2020

Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data

scientific article published in 2022

Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018

scientific article published on 13 July 2020

SARS-CoV-2 Omicron variant of concern in the Seychelles: Introduction and spread

scientific article published in 2023

Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya

scientific article published on 22 September 2020

Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya: baseline epidemiological observations

article

Temporal distribution and clinical characteristics of the Alpha, Delta and Omicron SARS-CoV-2 variants of concern in Laikipia, Kenya: institutional and community-based genomic surveillance

scientific article published in 2023

Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16

scientific article published on 01 January 2020

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains

article

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

scientific article published on 02 January 2020

Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018

scientific article published on 08 July 2021

Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018

scientific article published on 23 September 2021

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