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List of works by Jongsik Chun

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan ⬇️

scientific article published on July 7, 2011

A report of 21 unreported bacterial species in Korea, belonging to the Betaproteobacteria ⬇️

A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria ⬇️

AMDB: a database of animal gut microbial communities with manually curated metadata

scientific article published on 01 January 2022

Accurate delimitation of Phanerochaete chrysosporium and Phanerochaete sordida by specific PCR primers and cultural approach.

scientific article published in March 2007

Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment

scientific article

Aestuariibacter salexigens gen. nov., sp. nov. and Aestuariibacter halophilus sp. nov., isolated from tidal flat sediment, and emended description of Alteromonas macleodii

scientific article published in March 2004

Amycolatopsis thermoflava sp. nov., a novel soil actinomycete from Hainan Island, China

scientific article

Application of the Whole Genome-Based Bacterial Identification System, TrueBac ID, Using Clinical Isolates That Were Not Identified With Three Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) Systems

scientific article published on 01 November 2019

Aquimarina addita sp. nov., isolated from seawater ⬇️

scientific article published on November 12, 2010

Archaeal diversity in tidal flat sediment as revealed by 16S rDNA analysis.

scientific article published in April 2005

Arenibacter gen. nov., new genus of the family flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov.

scientific article

Bacterial community structure in kimchi, a Korean fermented vegetable food, as revealed by 16S rRNA gene analysis

scientific article published in August 2005

Burkholderia megalochromosomata sp. nov., isolated from grassland soil.

scientific article

Burkholderia monticola sp. nov., isolated from mountain soil

scientific article

Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle

scientific article published on 09 June 2020

Characteristics of a pandemic clone of O3 : K6 and O4 : K68 Vibrio parahaemolyticus isolated in Beira, Mozambique.

scientific article

Cholera outbreaks caused by an altered Vibrio cholerae O1 El Tor biotype strain producing classical cholera toxin B in Vietnam in 2007 to 2008.

scientific article published on 18 March 2009

Classical RS1 and environmental RS1 elements in Vibrio cholerae O1 El Tor strains harbouring a tandem repeat of CTX prophage: revisiting Mozambique in 2005.

scientific article published on 10 December 2009

Classification of hybrid and altered Vibrio cholerae strains by CTX prophage and RS1 element structure.

scientific article

Clonality and Resistome analysis of KPC-producing Klebsiella pneumoniae strain isolated in Korea using whole genome sequencing

scientific article

Clostridium aestuarii sp. nov., from tidal flat sediment

scientific article

Clostridium ganghwense sp. nov., isolated from tidal flat sediment

scientific article

Comamonas koreensis sp. nov., a non-motile species from wetland in Woopo, Korea

scientific article

Comparative Genomic Analysis of the 2016 Vibrio cholerae Outbreak in South Korea

scientific article published on 16 August 2019

Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis: Proposal for the Recognition of Two Bacillus thuringiensis Genomovars

scientific article published on 23 August 2019

Comparative approach to capture bacterial diversity of coastal waters ⬇️

scientific article published on November 9, 2011

Comparative genomics of Neisseria weaveri clarifies the taxonomy of this species and identifies genetic determinants that may be associated with virulence ⬇️

scientific article published on January 6, 2012

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae.

scientific article

Comparison of the Gut Microbiota of Centenarians in Longevity Villages of South Korea with Those of Other Age Groups

scientific article published on 01 March 2019

Complete Genome Sequence of Middle East Respiratory Syndrome Coronavirus KOR/KNIH/002_05_2015, Isolated in South Korea

scientific article

Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154.

scientific article

Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-02.

scientific article

Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-36Y, belonging to the INT5 genotype.

scientific article

Complete genome sequence of Mycobacterium intracellulare strain ATCC 13950(T).

scientific article

Complete genome sequence of Vibrio vulnificus MO6-24/O.

scientific article

ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences

scientific article

Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis

scientific article

Distinctive Phyllosphere Bacterial Communities in Tropical Trees ⬇️

scientific article published on October 12, 2011

Diversity of bacterial community in freshwater of Woopo wetland

scientific article published on 24 December 2008

Draft Genome Sequence of Escherichia coli W26, an Enteric Strain Isolated from Cow Feces ⬇️

scientific article published on September 1, 2012

Draft Genome Sequence of Methylophaga aminisulfidivorans MP T ⬇️

scientific article published on June 17, 2011

Draft genome sequence of Klebsiella pneumoniae subsp. pneumoniae DSM 30104T

scientific article

Draft genome sequence of Shewanella sp. strain HN-41, which produces arsenic-sulfide nanotubes ⬇️

scientific article published on September 1, 2011

Draft genome sequence of Staphylococcus saprophyticus subsp. saprophyticus M1-1, isolated from the gills of a Korean rockfish, Sebastes schlegeli Hilgendorf, after high hydrostatic pressure processing

scientific article

Draft genome sequence of Weissella koreensis KCTC 3621T

scientific article

Draft genome sequencing of Bacillus sp. strain M2-6, isolated from the roots of Korean ginseng, Panax ginseng C. A. Meyer, after high-hydrostatic-pressure processing

scientific article

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq ⬇️

scientific article published on August 31, 2011

Emotional well-being and gut microbiome profiles by enterotype

scientific article published on 26 November 2020

Evidence for several waves of global transmission in the seventh cholera pandemic

scientific article

EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes

scientific article

EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences

scientific article (publication date: October 2007)

Flavivirga jejuensis gen. nov., sp. nov., and Flavivirga amylovorans sp. nov., new members of the family Flavobacteriaceae isolated from seawater, and emended descriptions of the genera Psychroserpens and Lacinutrix ⬇️

scientific article published on June 24, 2011

Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic

scientific article

Flavobacterium limnosediminis sp. nov., isolated from sediment of a freshwater lake

scientific article

Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic

scientific article

Fretibacter rubidus gen. nov., sp. nov., isolated from seawater

scientific article

Genome Sequence of Escherichia coli AA86, Isolated from Cow Feces ⬇️

scientific article published on May 20, 2011

Genome Sequence of Extracellular-Protease-Producing Alishewanella jeotgali Isolated from Traditional Korean Fermented Seafood ⬇️

scientific article published on April 1, 2012

Genome Sequence of Pectin-Degrading Alishewanella agri, Isolated from Landfill Soil ⬇️

scientific article published on September 1, 2012

Genome insights into the pharmaceutical and plant growth promoting features of the novel species Nocardia alni sp. nov ⬇️

scholarly article published in 2022

Genome sequence of Escherichia coli J53, a reference strain for genetic studies

scientific article

Genome sequence of Lactobacillus johnsonii PF01, isolated from piglet feces

scientific article

Genome sequence of Lactobacillus mucosae LM1, isolated from piglet feces

scientific article

Genome sequence of Lactobacillus ruminis SPM0211, isolated from a fecal sample from a healthy Korean

scientific article

Genome sequence of Lactobacillus salivarius GJ-24, a probiotic strain isolated from healthy adult intestine

scientific article

Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae

scientific article

Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)).

scientific article published on 03 June 2013

Genome sequence of type strain of Staphylococcus aureus subsp. aureus

scientific article published on 17 March 2014

Genome-based reclassification of Paenibacillus jamilae Aguilera et al. 2001 as a later heterotypic synonym of Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994

scientific article published on 24 April 2020

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Genomic evolution of Vibrio cholerae

scientific article

Genomic insights into the taxonomic status of the three subspecies of Bacillus subtilis

scientific article

Genotypes associated with virulence in environmental isolates of Vibrio cholerae

scientific article

Glaciecola nitratireducens sp. nov., isolated from seawater

scientific article

Hahella ganghwensis sp. nov., isolated from tidal flat sediment

scientific article

Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment

scientific article

Hymenobacter rigui sp. nov., isolated from wetland freshwater

scientific article

Identification and characterization of metagenomic fragments from tidal flat sediment

scientific article

Identification of household bacterial community and analysis of species shared with human microbiome

scientific article

Idiomarina gen. nov., comprising novel indigenous deep-sea bacteria from the Pacific Ocean, including descriptions of two species, Idiomarina abyssalis sp. nov. and Idiomarina zobellii sp. nov.

scientific article

Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis ⬇️

scientific article published on February 3, 2012

Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus

scientific article published on 10 March 2020

Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform

scientific article

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

scientific article published on 22 December 2016

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species ⬇️

scientific article published on November 25, 2011

Introducing Murine Microbiome Database (MMDB): A Curated Database with Taxonomic Profiling of the Healthy Mouse Gastrointestinal Microbiome

scientific article published on 23 October 2019

Isolation of Salmonella enterica subspecies enterica serovar Paratyphi B dT+, or Salmonella Java, from Indonesia and alteration of the d-tartrate fermentation phenotype by disrupting the ORF STM 3356.

scientific article

Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide

scientific article

Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide

erratum published in November 2005

Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size

article

Large-scale evaluation of experimentally determined DNA G+C contents with whole genome sequences of prokaryotes.

scientific article published on 24 December 2014

Luteimonas marina sp. nov., isolated from seawater

scientific article

Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment

scientific article

Metagenomic Association Analysis of Gut Symbiont <i>Limosilactobacillus reuteri</i> Without Host-Specific Genome Isolation

scientific article published on 16 November 2020

Metagenomic insights into the bioaerosols in the indoor and outdoor environments of childcare facilities

scientific article published on 28 May 2015

Multilocus sequence typing (MLST) analysis of Vibrio cholerae O1 El Tor isolates from Mozambique that harbour the classical CTX prophage.

scientific article

Multilocus sequence typing analysis of Shigella flexneri isolates collected in Asian countries

scientific article

Multilocus variable-number tandem repeat analysis of Vibrio cholerae O1 El Tor strains harbouring classical toxin B.

scientific article

Neisseria weaveri Andersen et al. 1993 is a later heterotypic synonym of Neisseria weaveri Holmes et al. 1993.

scientific article

Nocardia crassostreae sp. nov., the causal agent of nocardiosis in Pacific oysters

scientific article

Nocardia flavorosea sp. nov.

scientific article

Nocardia salmonicida nom. rev., a fish pathogen

scientific article

Nocardia uniformis nom. rev.

scientific article

Nocardioides aestuarii sp. nov., isolated from tidal flat sediment

scientific article

Nocardioides dokdonensis sp. nov., an actinomycete isolated from sand sediment

scientific article

Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment

scientific article

Occurrence of the Vibrio cholerae seventh pandemic VSP-I island and a new variant.

scientific article

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

scientific article

Photobacterium ganghwense sp. nov., a halophilic bacterium isolated from sea water

scientific article

Phylogenetic Analysis of the nef Gene Reveals a Distinctive Monophyletic Clade in Korean HIV-1 Cases ⬇️

scientific article published on January 1, 1998

Phylogenetic analysis of the genera Streptomyces and Kitasatospora based on partial RNA polymerase beta-subunit gene (rpoB) sequences

scientific article

Phylogenetic study of the species within the family Streptomycetaceae

scientific article

Profiling bacterial community in upper respiratory tracts.

scientific article

Proposal to transfer Flavobacterium oceanosedimentum Carty and Litchfield 1978 to the genus Curtobacterium as Curtobacterium oceanosedimentum comb. nov.

scientific article published on 05 May 2009

Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea

scientific article

Pseudomonas panacis sp. nov., isolated from the surface of rusty roots of Korean ginseng

scientific article

Pseudomonas segetis sp. nov., isolated from soil

scientific article

Reclassification of Alteromonas distincta Romanenko et al. 1995 as Pseudoalteromonas distincta comb. nov.

scientific article

Reclassification of Flavobacterium resinovorum Delaporte and Daste 1956 as Novosphingobium resinovorum comb. nov., with Novosphingobium subarcticum (Nohynek et al. 1996) Takeuchi et al. 2001 as a later heterotypic synonym

scientific article published on August 2007

Replication of Vibrio cholerae classical CTX phage

scientific article published on 14 February 2017

Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus ⬇️

Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes ⬇️

Report on 31 unrecorded bacterial species in Korea that belong to the phylum Actinobacteria ⬇️

Rhodococcal systematics: problems and developments

scientific article

Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic

scientific article

Snuella lapsa gen. nov., sp. nov., isolated from tidal flat sediment ⬇️

scientific article published on November 19, 2010

TBC: a clustering algorithm based on prokaryotic taxonomy

scientific article published on 27 April 2012

Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999.

scientific article

Thalassobius aestuarii sp. nov., isolated from tidal flat sediment

scientific article

Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment

scientific article

The Complete Genome Sequence of Thermococcus onnurineus NA1 Reveals a Mixed Heterotrophic and Carboxydotrophic Metabolism

scientific article

The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir

scientific article

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

scientific article (publication date: February 2014)

Transfer of Hongia koreensis Lee et al. 2000 to the genus Kribbella Park et al. 1999 as Kribbella koreensis comb. nov.

scientific article published on July 2003

Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam

scientific article

Tsukamurella spumae sp. nov., a novel actinomycete associated with foaming in activated sludge plants

scientific article

UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis

scientific article published on 29 May 2021

UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction

scientific article published on 28 February 2018

Unification of the genera Nonlabens, Persicivirga, Sandarakinotalea and Stenothermobacter into a single emended genus, Nonlabens, and description of Nonlabens agnitus sp. nov ⬇️

scientific article published on February 10, 2012

VCGIDB: A Database and Web Resource for the Genomic Islands from Vibrio Cholerae

scientific article published on 23 November 2019

Zooshikella ganghwensis gen. nov., sp. nov., isolated from tidal flat sediments

scientific article

rRNASelector: a computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries

scientific article

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